Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02845

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02835 and HSERO_RS02840 are separated by 66 nucleotidesHSERO_RS02840 and HSERO_RS02845 are separated by 105 nucleotidesHSERO_RS02845 and HSERO_RS02850 are separated by 128 nucleotides HSERO_RS02835: HSERO_RS02835 - FMN-dependent NADH-azoreductase, at 622,015 to 622,632 _RS02835 HSERO_RS02840: HSERO_RS02840 - polyketide synthase, at 622,699 to 623,343 _RS02840 HSERO_RS02845: HSERO_RS02845 - amidohydrolase, at 623,449 to 625,026 _RS02845 HSERO_RS02850: HSERO_RS02850 - glutamyl-tRNA(Gln) amidotransferase, at 625,155 to 627,110 _RS02850 Position (kb) 623 624 625 626Strain fitness (log2 ratio) -2 -1 0 1 2at 622.473 kb on - strand, within HSERO_RS02835at 622.497 kb on - strand, within HSERO_RS02835at 622.508 kb on + strand, within HSERO_RS02835at 622.513 kb on + strand, within HSERO_RS02835at 622.546 kb on - strand, within HSERO_RS02835at 622.547 kb on + strand, within HSERO_RS02835at 622.713 kb on + strandat 622.723 kb on + strandat 622.723 kb on + strandat 622.979 kb on - strand, within HSERO_RS02840at 623.025 kb on - strand, within HSERO_RS02840at 623.037 kb on + strand, within HSERO_RS02840at 623.041 kb on - strand, within HSERO_RS02840at 623.151 kb on - strand, within HSERO_RS02840at 623.151 kb on - strand, within HSERO_RS02840at 623.151 kb on - strand, within HSERO_RS02840at 623.151 kb on - strand, within HSERO_RS02840at 623.168 kb on + strand, within HSERO_RS02840at 623.208 kb on + strand, within HSERO_RS02840at 623.208 kb on + strand, within HSERO_RS02840at 623.208 kb on + strand, within HSERO_RS02840at 623.216 kb on - strand, within HSERO_RS02840at 623.265 kb on + strand, within HSERO_RS02840at 623.314 kb on + strandat 623.401 kb on - strandat 623.462 kb on - strandat 623.472 kb on + strandat 623.551 kb on - strandat 623.559 kb on + strandat 623.730 kb on + strand, within HSERO_RS02845at 623.931 kb on + strand, within HSERO_RS02845at 623.936 kb on + strand, within HSERO_RS02845at 623.936 kb on + strand, within HSERO_RS02845at 624.060 kb on - strand, within HSERO_RS02845at 624.127 kb on - strand, within HSERO_RS02845at 624.246 kb on - strand, within HSERO_RS02845at 624.419 kb on + strand, within HSERO_RS02845at 624.445 kb on + strand, within HSERO_RS02845at 624.455 kb on + strand, within HSERO_RS02845at 624.455 kb on + strand, within HSERO_RS02845at 624.455 kb on + strand, within HSERO_RS02845at 624.455 kb on + strand, within HSERO_RS02845at 624.460 kb on + strand, within HSERO_RS02845at 624.463 kb on - strand, within HSERO_RS02845at 624.623 kb on - strand, within HSERO_RS02845at 625.001 kb on - strandat 625.103 kb on + strandat 625.194 kb on - strandat 625.287 kb on + strandat 625.287 kb on + strandat 625.293 kb on - strandat 625.444 kb on - strand, within HSERO_RS02850at 625.488 kb on - strand, within HSERO_RS02850at 625.538 kb on - strand, within HSERO_RS02850at 625.565 kb on - strand, within HSERO_RS02850at 625.592 kb on - strand, within HSERO_RS02850at 625.646 kb on + strand, within HSERO_RS02850at 625.716 kb on + strand, within HSERO_RS02850at 625.731 kb on + strand, within HSERO_RS02850at 625.890 kb on - strandat 625.911 kb on - strand, within HSERO_RS02850at 625.965 kb on + strand, within HSERO_RS02850

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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622,473 - HSERO_RS02835 0.74 -0.2
622,497 - HSERO_RS02835 0.78 +0.3
622,508 + HSERO_RS02835 0.80 +0.2
622,513 + HSERO_RS02835 0.81 +0.3
622,546 - HSERO_RS02835 0.86 +0.1
622,547 + HSERO_RS02835 0.86 -1.6
622,713 + -0.9
622,723 + -0.0
622,723 + +0.4
622,979 - HSERO_RS02840 0.43 -0.1
623,025 - HSERO_RS02840 0.51 +0.4
623,037 + HSERO_RS02840 0.52 -0.8
623,041 - HSERO_RS02840 0.53 -0.2
623,151 - HSERO_RS02840 0.70 -0.5
623,151 - HSERO_RS02840 0.70 +1.2
623,151 - HSERO_RS02840 0.70 -0.1
623,151 - HSERO_RS02840 0.70 -0.1
623,168 + HSERO_RS02840 0.73 +0.3
623,208 + HSERO_RS02840 0.79 +0.3
623,208 + HSERO_RS02840 0.79 -0.4
623,208 + HSERO_RS02840 0.79 +0.4
623,216 - HSERO_RS02840 0.80 +0.3
623,265 + HSERO_RS02840 0.88 +0.0
623,314 + +1.4
623,401 - +1.8
623,462 - +1.2
623,472 + +0.7
623,551 - -2.6
623,559 + +1.2
623,730 + HSERO_RS02845 0.18 +0.3
623,931 + HSERO_RS02845 0.31 +0.7
623,936 + HSERO_RS02845 0.31 -0.0
623,936 + HSERO_RS02845 0.31 +0.9
624,060 - HSERO_RS02845 0.39 +0.2
624,127 - HSERO_RS02845 0.43 -0.4
624,246 - HSERO_RS02845 0.51 +0.6
624,419 + HSERO_RS02845 0.61 +0.3
624,445 + HSERO_RS02845 0.63 +0.5
624,455 + HSERO_RS02845 0.64 -1.0
624,455 + HSERO_RS02845 0.64 +0.5
624,455 + HSERO_RS02845 0.64 +2.0
624,455 + HSERO_RS02845 0.64 +1.0
624,460 + HSERO_RS02845 0.64 -0.4
624,463 - HSERO_RS02845 0.64 +0.6
624,623 - HSERO_RS02845 0.74 -0.1
625,001 - +2.2
625,103 + +0.1
625,194 - +0.2
625,287 + -0.3
625,287 + +0.9
625,293 - +0.7
625,444 - HSERO_RS02850 0.15 -0.1
625,488 - HSERO_RS02850 0.17 +0.1
625,538 - HSERO_RS02850 0.20 -0.3
625,565 - HSERO_RS02850 0.21 -0.6
625,592 - HSERO_RS02850 0.22 -0.3
625,646 + HSERO_RS02850 0.25 -0.3
625,716 + HSERO_RS02850 0.29 -0.1
625,731 + HSERO_RS02850 0.29 -0.1
625,890 - +0.9
625,911 - HSERO_RS02850 0.39 -0.6
625,965 + HSERO_RS02850 0.41 +0.5

Or see this region's nucleotide sequence