Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26465 and BWI76_RS26470 overlap by 1 nucleotides BWI76_RS26470 and BWI76_RS26475 overlap by 4 nucleotides BWI76_RS26475 and BWI76_RS26480 overlap by 4 nucleotides BWI76_RS26480 and BWI76_RS26485 are separated by 1 nucleotides
BWI76_RS26465: BWI76_RS26465 - 4-amino-4-deoxy-L-arabinose lipid A transferase, at 5,476,074 to 5,477,729
_RS26465
BWI76_RS26470: BWI76_RS26470 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 5,477,729 to 5,478,631
_RS26470
BWI76_RS26475: BWI76_RS26475 - bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,478,628 to 5,480,613
_RS26475
BWI76_RS26480: BWI76_RS26480 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,480,610 to 5,481,593
_RS26480
BWI76_RS26485: BWI76_RS26485 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase, at 5,481,595 to 5,482,734
_RS26485
Position (kb) 5478
5479
5480
5481 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5477.639 kb on - strand at 5477.842 kb on + strand, within BWI76_RS26470 at 5477.890 kb on - strand, within BWI76_RS26470 at 5477.890 kb on - strand, within BWI76_RS26470 at 5477.940 kb on + strand, within BWI76_RS26470 at 5477.948 kb on - strand, within BWI76_RS26470 at 5478.061 kb on - strand, within BWI76_RS26470 at 5478.102 kb on - strand, within BWI76_RS26470 at 5478.282 kb on + strand, within BWI76_RS26470 at 5478.498 kb on + strand, within BWI76_RS26470 at 5478.649 kb on + strand at 5478.673 kb on + strand at 5478.684 kb on + strand at 5478.753 kb on + strand at 5478.809 kb on - strand at 5478.855 kb on + strand, within BWI76_RS26475 at 5478.963 kb on - strand at 5479.037 kb on - strand, within BWI76_RS26475 at 5479.057 kb on - strand, within BWI76_RS26475 at 5479.171 kb on + strand, within BWI76_RS26475 at 5479.229 kb on + strand, within BWI76_RS26475 at 5479.263 kb on + strand, within BWI76_RS26475 at 5479.375 kb on - strand, within BWI76_RS26475 at 5479.439 kb on + strand, within BWI76_RS26475 at 5479.476 kb on - strand, within BWI76_RS26475 at 5479.501 kb on + strand, within BWI76_RS26475 at 5479.580 kb on - strand, within BWI76_RS26475 at 5479.699 kb on + strand, within BWI76_RS26475 at 5479.707 kb on - strand, within BWI76_RS26475 at 5480.260 kb on + strand, within BWI76_RS26475 at 5480.307 kb on + strand at 5480.455 kb on + strand at 5480.515 kb on - strand at 5480.571 kb on - strand at 5480.726 kb on + strand, within BWI76_RS26480 at 5481.049 kb on + strand, within BWI76_RS26480 at 5481.054 kb on - strand, within BWI76_RS26480 at 5481.203 kb on - strand, within BWI76_RS26480 at 5481.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 5,477,639 - -0.9 5,477,842 + BWI76_RS26470 0.13 +0.0 5,477,890 - BWI76_RS26470 0.18 -3.5 5,477,890 - BWI76_RS26470 0.18 -0.9 5,477,940 + BWI76_RS26470 0.23 -0.3 5,477,948 - BWI76_RS26470 0.24 -0.2 5,478,061 - BWI76_RS26470 0.37 -1.6 5,478,102 - BWI76_RS26470 0.41 -1.6 5,478,282 + BWI76_RS26470 0.61 +0.6 5,478,498 + BWI76_RS26470 0.85 -1.3 5,478,649 + -1.2 5,478,673 + -1.4 5,478,684 + +0.5 5,478,753 + -0.6 5,478,809 - -2.1 5,478,855 + BWI76_RS26475 0.11 -1.0 5,478,963 - +0.9 5,479,037 - BWI76_RS26475 0.21 -0.9 5,479,057 - BWI76_RS26475 0.22 -2.0 5,479,171 + BWI76_RS26475 0.27 -1.1 5,479,229 + BWI76_RS26475 0.30 -1.4 5,479,263 + BWI76_RS26475 0.32 -1.4 5,479,375 - BWI76_RS26475 0.38 -0.6 5,479,439 + BWI76_RS26475 0.41 -1.1 5,479,476 - BWI76_RS26475 0.43 -0.5 5,479,501 + BWI76_RS26475 0.44 -1.5 5,479,580 - BWI76_RS26475 0.48 -1.0 5,479,699 + BWI76_RS26475 0.54 -0.9 5,479,707 - BWI76_RS26475 0.54 -1.4 5,480,260 + BWI76_RS26475 0.82 -0.8 5,480,307 + -0.9 5,480,455 + -0.8 5,480,515 - -0.9 5,480,571 - +0.1 5,480,726 + BWI76_RS26480 0.12 -2.9 5,481,049 + BWI76_RS26480 0.45 -1.4 5,481,054 - BWI76_RS26480 0.45 -1.2 5,481,203 - BWI76_RS26480 0.60 -1.1 5,481,598 - -0.3
Or see this region's nucleotide sequence