Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25200 and BWI76_RS25205 are separated by 54 nucleotides BWI76_RS25205 and BWI76_RS25210 are separated by 135 nucleotides BWI76_RS25210 and BWI76_RS25215 overlap by 1 nucleotides BWI76_RS25215 and BWI76_RS25220 are separated by 18 nucleotides
BWI76_RS25200: BWI76_RS25200 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 5,242,406 to 5,243,665
_RS25200
BWI76_RS25205: BWI76_RS25205 - hypothetical protein, at 5,243,720 to 5,243,974
_RS25205
BWI76_RS25210: BWI76_RS25210 - sulfate transporter, at 5,244,110 to 5,244,400
_RS25210
BWI76_RS25215: BWI76_RS25215 - phospholipid-binding protein MlaC, at 5,244,400 to 5,245,035
_RS25215
BWI76_RS25220: BWI76_RS25220 - outer membrane lipid asymmetry maintenance protein MlaD, at 5,245,054 to 5,245,605
_RS25220
Position (kb) 5244
5245 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5243.761 kb on - strand, within BWI76_RS25205 at 5244.001 kb on - strand at 5244.019 kb on - strand at 5244.039 kb on - strand at 5244.176 kb on + strand, within BWI76_RS25210 at 5244.381 kb on + strand at 5244.440 kb on + strand at 5244.624 kb on + strand, within BWI76_RS25215 at 5244.666 kb on - strand, within BWI76_RS25215 at 5244.677 kb on - strand, within BWI76_RS25215 at 5244.737 kb on - strand, within BWI76_RS25215 at 5244.890 kb on + strand, within BWI76_RS25215 at 5244.956 kb on - strand, within BWI76_RS25215 at 5245.147 kb on + strand, within BWI76_RS25220 at 5245.147 kb on - strand, within BWI76_RS25220 at 5245.224 kb on + strand, within BWI76_RS25220 at 5245.268 kb on + strand, within BWI76_RS25220 at 5245.326 kb on + strand, within BWI76_RS25220 at 5245.369 kb on - strand, within BWI76_RS25220
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 5,243,761 - BWI76_RS25205 0.16 -0.3 5,244,001 - +0.1 5,244,019 - +0.2 5,244,039 - +0.5 5,244,176 + BWI76_RS25210 0.23 -1.2 5,244,381 + -2.8 5,244,440 + -2.3 5,244,624 + BWI76_RS25215 0.35 -2.8 5,244,666 - BWI76_RS25215 0.42 -4.6 5,244,677 - BWI76_RS25215 0.44 -3.5 5,244,737 - BWI76_RS25215 0.53 -4.6 5,244,890 + BWI76_RS25215 0.77 -1.8 5,244,956 - BWI76_RS25215 0.87 -0.0 5,245,147 + BWI76_RS25220 0.17 -2.9 5,245,147 - BWI76_RS25220 0.17 -1.7 5,245,224 + BWI76_RS25220 0.31 -2.4 5,245,268 + BWI76_RS25220 0.39 -3.1 5,245,326 + BWI76_RS25220 0.49 -2.3 5,245,369 - BWI76_RS25220 0.57 -2.6
Or see this region's nucleotide sequence