Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22085 and BWI76_RS22090 are separated by 91 nucleotides BWI76_RS22090 and BWI76_RS22095 are separated by 131 nucleotides BWI76_RS22095 and BWI76_RS22100 are separated by 15 nucleotides
BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060
_RS22085
BWI76_RS22090: BWI76_RS22090 - transcriptional regulator, at 4,611,152 to 4,611,682
_RS22090
BWI76_RS22095: BWI76_RS22095 - multidrug export protein EmrA, at 4,611,814 to 4,612,986
_RS22095
BWI76_RS22100: BWI76_RS22100 - multidrug effux MFS transporter subunit EmrB, at 4,613,002 to 4,614,540
_RS22100
Position (kb)
4611
4612
4613 Strain fitness (log2 ratio)
-2
-1
0
1 at 4610.964 kb on - strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.504 kb on + strand, within BWI76_RS22090 at 4611.570 kb on + strand, within BWI76_RS22090 at 4611.615 kb on + strand, within BWI76_RS22090 at 4611.683 kb on + strand at 4612.093 kb on - strand at 4612.204 kb on - strand, within BWI76_RS22095 at 4612.390 kb on - strand, within BWI76_RS22095 at 4612.997 kb on + strand at 4613.131 kb on - strand at 4613.221 kb on - strand, within BWI76_RS22100 at 4613.901 kb on - strand, within BWI76_RS22100
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 4,610,964 - BWI76_RS22085 0.71 +1.1 4,611,016 + BWI76_RS22085 0.87 +1.0 4,611,016 + BWI76_RS22085 0.87 +0.9 4,611,504 + BWI76_RS22090 0.66 +0.7 4,611,570 + BWI76_RS22090 0.79 +1.2 4,611,615 + BWI76_RS22090 0.87 +1.5 4,611,683 + -0.8 4,612,093 - +0.0 4,612,204 - BWI76_RS22095 0.33 -1.5 4,612,390 - BWI76_RS22095 0.49 -1.4 4,612,997 + +0.7 4,613,131 - -0.3 4,613,221 - BWI76_RS22100 0.14 -1.8 4,613,901 - BWI76_RS22100 0.58 -0.7
Or see this region's nucleotide sequence