Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17075 and BWI76_RS17080 are separated by 117 nucleotides BWI76_RS17080 and BWI76_RS17085 are separated by 34 nucleotides
BWI76_RS17075: BWI76_RS17075 - 3-deoxy-7-phosphoheptulonate synthase, at 3,543,769 to 3,544,815
_RS17075
BWI76_RS17080: BWI76_RS17080 - hypothetical protein, at 3,544,933 to 3,545,160
_RS17080
BWI76_RS17085: BWI76_RS17085 - hypothetical protein, at 3,545,195 to 3,546,637
_RS17085
Position (kb)
3544
3545
3546 Strain fitness (log2 ratio)
-1
0
1
2 at 3544.161 kb on + strand, within BWI76_RS17075 at 3544.279 kb on - strand, within BWI76_RS17075 at 3544.310 kb on - strand, within BWI76_RS17075 at 3544.444 kb on - strand, within BWI76_RS17075 at 3545.073 kb on - strand, within BWI76_RS17080 at 3545.109 kb on + strand, within BWI76_RS17080 at 3545.112 kb on - strand, within BWI76_RS17080 at 3545.117 kb on - strand, within BWI76_RS17080 at 3545.121 kb on + strand, within BWI76_RS17080 at 3545.122 kb on - strand, within BWI76_RS17080 at 3545.140 kb on + strand at 3545.180 kb on - strand at 3545.385 kb on - strand, within BWI76_RS17085 at 3545.420 kb on - strand, within BWI76_RS17085 at 3545.599 kb on - strand, within BWI76_RS17085 at 3546.020 kb on - strand, within BWI76_RS17085 at 3546.160 kb on + strand, within BWI76_RS17085
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 3,544,161 + BWI76_RS17075 0.37 +0.3 3,544,279 - BWI76_RS17075 0.49 -0.3 3,544,310 - BWI76_RS17075 0.52 +0.4 3,544,444 - BWI76_RS17075 0.64 +0.4 3,545,073 - BWI76_RS17080 0.61 +0.8 3,545,109 + BWI76_RS17080 0.77 +1.4 3,545,112 - BWI76_RS17080 0.79 +1.0 3,545,117 - BWI76_RS17080 0.81 +1.2 3,545,121 + BWI76_RS17080 0.82 +1.0 3,545,122 - BWI76_RS17080 0.83 +0.9 3,545,140 + +0.9 3,545,180 - +2.0 3,545,385 - BWI76_RS17085 0.13 +1.5 3,545,420 - BWI76_RS17085 0.16 +0.1 3,545,599 - BWI76_RS17085 0.28 +0.3 3,546,020 - BWI76_RS17085 0.57 +0.0 3,546,160 + BWI76_RS17085 0.67 +1.0
Or see this region's nucleotide sequence