Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15040 and BWI76_RS15045 are separated by 92 nucleotides BWI76_RS15045 and BWI76_RS15050 overlap by 18 nucleotides
BWI76_RS15040: BWI76_RS15040 - putative 2-nitropropane dioxygenase, at 3,147,935 to 3,148,981
_RS15040
BWI76_RS15045: BWI76_RS15045 - LysR family transcriptional regulator, at 3,149,074 to 3,149,910
_RS15045
BWI76_RS15050: BWI76_RS15050 - sugar transporter, at 3,149,893 to 3,151,080
_RS15050
Position (kb)
3149
3150 Strain fitness (log2 ratio)
-1
0
1 at 3148.203 kb on + strand, within BWI76_RS15040 at 3148.263 kb on + strand, within BWI76_RS15040 at 3148.302 kb on - strand, within BWI76_RS15040 at 3148.304 kb on + strand, within BWI76_RS15040 at 3148.304 kb on + strand, within BWI76_RS15040 at 3148.317 kb on + strand, within BWI76_RS15040 at 3148.389 kb on - strand, within BWI76_RS15040 at 3148.478 kb on - strand, within BWI76_RS15040 at 3148.509 kb on - strand, within BWI76_RS15040 at 3148.603 kb on + strand, within BWI76_RS15040 at 3149.322 kb on - strand, within BWI76_RS15045 at 3149.332 kb on - strand, within BWI76_RS15045 at 3149.625 kb on + strand, within BWI76_RS15045 at 3149.848 kb on - strand at 3149.989 kb on - strand at 3150.125 kb on - strand, within BWI76_RS15050 at 3150.239 kb on - strand, within BWI76_RS15050 at 3150.461 kb on + strand, within BWI76_RS15050
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 3,148,203 + BWI76_RS15040 0.26 +0.2 3,148,263 + BWI76_RS15040 0.31 +0.7 3,148,302 - BWI76_RS15040 0.35 +0.1 3,148,304 + BWI76_RS15040 0.35 -1.5 3,148,304 + BWI76_RS15040 0.35 +0.3 3,148,317 + BWI76_RS15040 0.36 -0.2 3,148,389 - BWI76_RS15040 0.43 +0.1 3,148,478 - BWI76_RS15040 0.52 -0.1 3,148,509 - BWI76_RS15040 0.55 +0.3 3,148,603 + BWI76_RS15040 0.64 -0.8 3,149,322 - BWI76_RS15045 0.30 +0.9 3,149,332 - BWI76_RS15045 0.31 +0.5 3,149,625 + BWI76_RS15045 0.66 +0.0 3,149,848 - +0.6 3,149,989 - +0.3 3,150,125 - BWI76_RS15050 0.20 +0.2 3,150,239 - BWI76_RS15050 0.29 +0.0 3,150,461 + BWI76_RS15050 0.48 +0.4
Or see this region's nucleotide sequence