Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13925 and BWI76_RS13930 are separated by 265 nucleotides BWI76_RS13930 and BWI76_RS13935 are separated by 99 nucleotides BWI76_RS13935 and BWI76_RS13940 are separated by 9 nucleotides
BWI76_RS13925: BWI76_RS13925 - catalase/peroxidase HPI, at 2,907,165 to 2,909,348
_RS13925
BWI76_RS13930: BWI76_RS13930 - putative LysR-family transcriptional regulator, at 2,909,614 to 2,910,546
_RS13930
BWI76_RS13935: BWI76_RS13935 - hypothetical protein, at 2,910,646 to 2,911,080
_RS13935
BWI76_RS13940: BWI76_RS13940 - membrane protein, at 2,911,090 to 2,911,554
_RS13940
Position (kb)
2909
2910
2911 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2908.644 kb on - strand, within BWI76_RS13925 at 2908.663 kb on + strand, within BWI76_RS13925 at 2909.003 kb on + strand, within BWI76_RS13925 at 2909.021 kb on - strand at 2909.081 kb on + strand, within BWI76_RS13925 at 2909.526 kb on + strand at 2909.557 kb on - strand at 2909.626 kb on + strand at 2909.626 kb on + strand at 2909.634 kb on - strand at 2909.962 kb on - strand, within BWI76_RS13930 at 2910.272 kb on - strand, within BWI76_RS13930 at 2910.417 kb on + strand, within BWI76_RS13930 at 2910.425 kb on - strand, within BWI76_RS13930 at 2910.425 kb on - strand, within BWI76_RS13930 at 2910.687 kb on + strand at 2910.840 kb on + strand, within BWI76_RS13935 at 2911.090 kb on - strand at 2911.132 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 2,908,644 - BWI76_RS13925 0.68 -0.0 2,908,663 + BWI76_RS13925 0.69 +0.2 2,909,003 + BWI76_RS13925 0.84 +0.2 2,909,021 - +2.0 2,909,081 + BWI76_RS13925 0.88 -0.1 2,909,526 + -0.4 2,909,557 - +1.0 2,909,626 + +0.6 2,909,626 + +3.2 2,909,634 - +0.2 2,909,962 - BWI76_RS13930 0.37 +0.4 2,910,272 - BWI76_RS13930 0.71 +0.1 2,910,417 + BWI76_RS13930 0.86 +1.0 2,910,425 - BWI76_RS13930 0.87 -0.0 2,910,425 - BWI76_RS13930 0.87 +0.3 2,910,687 + -0.0 2,910,840 + BWI76_RS13935 0.45 +0.3 2,911,090 - -0.6 2,911,132 - -0.1
Or see this region's nucleotide sequence