Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10765 and BWI76_RS10770 overlap by 4 nucleotides BWI76_RS10770 and BWI76_RS10775 overlap by 8 nucleotides BWI76_RS10775 and BWI76_RS10780 overlap by 1 nucleotides
BWI76_RS10765: BWI76_RS10765 - pyrimidine utilization protein D, at 2,272,943 to 2,273,746
_RS10765
BWI76_RS10770: BWI76_RS10770 - pyrimidine utilization protein C, at 2,273,743 to 2,274,135
_RS10770
BWI76_RS10775: BWI76_RS10775 - pyrimidine utilization protein B, at 2,274,128 to 2,274,838
_RS10775
BWI76_RS10780: BWI76_RS10780 - pyrimidine utilization protein A, at 2,274,838 to 2,275,929
_RS10780
Position (kb)
2274
2275 Strain fitness (log2 ratio)
-1
0
1 at 2273.158 kb on - strand, within BWI76_RS10765 at 2273.158 kb on - strand, within BWI76_RS10765 at 2273.403 kb on - strand, within BWI76_RS10765 at 2273.463 kb on - strand, within BWI76_RS10765 at 2273.851 kb on - strand, within BWI76_RS10770 at 2273.922 kb on + strand, within BWI76_RS10770 at 2274.148 kb on + strand at 2274.172 kb on + strand at 2274.274 kb on - strand, within BWI76_RS10775 at 2274.279 kb on + strand, within BWI76_RS10775 at 2274.392 kb on + strand, within BWI76_RS10775 at 2274.414 kb on + strand, within BWI76_RS10775 at 2274.529 kb on + strand, within BWI76_RS10775 at 2274.537 kb on - strand, within BWI76_RS10775 at 2274.735 kb on - strand, within BWI76_RS10775 at 2274.788 kb on + strand at 2274.796 kb on + strand at 2275.360 kb on + strand, within BWI76_RS10780 at 2275.368 kb on - strand, within BWI76_RS10780 at 2275.654 kb on - strand, within BWI76_RS10780 at 2275.784 kb on + strand, within BWI76_RS10780
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 2,273,158 - BWI76_RS10765 0.27 +0.3 2,273,158 - BWI76_RS10765 0.27 -0.1 2,273,403 - BWI76_RS10765 0.57 +0.6 2,273,463 - BWI76_RS10765 0.65 -0.2 2,273,851 - BWI76_RS10770 0.27 +0.2 2,273,922 + BWI76_RS10770 0.46 -0.5 2,274,148 + +0.3 2,274,172 + +0.7 2,274,274 - BWI76_RS10775 0.21 -0.3 2,274,279 + BWI76_RS10775 0.21 -0.3 2,274,392 + BWI76_RS10775 0.37 +0.2 2,274,414 + BWI76_RS10775 0.40 -0.5 2,274,529 + BWI76_RS10775 0.56 +0.0 2,274,537 - BWI76_RS10775 0.58 +0.4 2,274,735 - BWI76_RS10775 0.85 -0.1 2,274,788 + -0.0 2,274,796 + +0.1 2,275,360 + BWI76_RS10780 0.48 -0.2 2,275,368 - BWI76_RS10780 0.49 -0.7 2,275,654 - BWI76_RS10780 0.75 -1.0 2,275,784 + BWI76_RS10780 0.87 -1.6
Or see this region's nucleotide sequence