Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07545 and BWI76_RS07550 overlap by 11 nucleotides BWI76_RS07550 and BWI76_RS07555 are separated by 469 nucleotides
BWI76_RS07545: BWI76_RS07545 - amidase, at 1,596,764 to 1,597,948
_RS07545
BWI76_RS07550: BWI76_RS07550 - Zn-dependent hydrolase, at 1,597,938 to 1,599,206
_RS07550
BWI76_RS07555: BWI76_RS07555 - EamA family transporter, at 1,599,676 to 1,600,566
_RS07555
Position (kb)
1597
1598
1599
1600 Strain fitness (log2 ratio)
-1
0
1 at 1597.190 kb on + strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.345 kb on - strand, within BWI76_RS07545 at 1597.449 kb on + strand, within BWI76_RS07545 at 1597.720 kb on - strand, within BWI76_RS07545 at 1597.753 kb on + strand, within BWI76_RS07545 at 1597.976 kb on - strand at 1598.065 kb on + strand, within BWI76_RS07550 at 1598.342 kb on + strand, within BWI76_RS07550 at 1598.471 kb on - strand, within BWI76_RS07550 at 1598.774 kb on + strand, within BWI76_RS07550 at 1598.852 kb on + strand, within BWI76_RS07550 at 1599.053 kb on + strand, within BWI76_RS07550 at 1599.226 kb on - strand at 1599.428 kb on + strand at 1599.602 kb on - strand at 1599.905 kb on + strand, within BWI76_RS07555 at 1599.910 kb on + strand, within BWI76_RS07555 at 1599.918 kb on - strand, within BWI76_RS07555 at 1600.059 kb on - strand at 1600.094 kb on + strand, within BWI76_RS07555 at 1600.130 kb on + strand, within BWI76_RS07555
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 1,597,190 + BWI76_RS07545 0.36 +0.2 1,597,345 - BWI76_RS07545 0.49 +0.2 1,597,345 - BWI76_RS07545 0.49 +1.3 1,597,449 + BWI76_RS07545 0.58 -0.1 1,597,720 - BWI76_RS07545 0.81 -0.9 1,597,753 + BWI76_RS07545 0.83 +0.4 1,597,976 - +0.2 1,598,065 + BWI76_RS07550 0.10 -0.4 1,598,342 + BWI76_RS07550 0.32 +0.7 1,598,471 - BWI76_RS07550 0.42 -0.8 1,598,774 + BWI76_RS07550 0.66 -0.2 1,598,852 + BWI76_RS07550 0.72 -1.0 1,599,053 + BWI76_RS07550 0.88 +1.0 1,599,226 - -0.5 1,599,428 + -0.1 1,599,602 - +0.1 1,599,905 + BWI76_RS07555 0.26 +0.0 1,599,910 + BWI76_RS07555 0.26 -0.1 1,599,918 - BWI76_RS07555 0.27 +0.3 1,600,059 - +1.7 1,600,094 + BWI76_RS07555 0.47 +0.2 1,600,130 + BWI76_RS07555 0.51 +0.1
Or see this region's nucleotide sequence