Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05125 and BWI76_RS05130 are separated by 45 nucleotides BWI76_RS05130 and BWI76_RS05135 overlap by 1 nucleotides BWI76_RS05135 and BWI76_RS05140 overlap by 4 nucleotides
BWI76_RS05125: BWI76_RS05125 - ferrichrome porin FhuA, at 1,076,135 to 1,078,339
_RS05125
BWI76_RS05130: BWI76_RS05130 - iron-hydroxamate transporter ATP-binding subunit, at 1,078,385 to 1,079,182
_RS05130
BWI76_RS05135: BWI76_RS05135 - iron-hydroxamate transporter substrate-binding subunit, at 1,079,182 to 1,080,072
_RS05135
BWI76_RS05140: BWI76_RS05140 - Fe3+-hydroxamate ABC transporter permease FhuB, at 1,080,069 to 1,082,051
_RS05140
Position (kb)
1079
1080
1081 Strain fitness (log2 ratio)
-1
0
1 at 1078.533 kb on + strand, within BWI76_RS05130 at 1078.686 kb on - strand, within BWI76_RS05130 at 1078.786 kb on + strand, within BWI76_RS05130 at 1078.794 kb on - strand, within BWI76_RS05130 at 1078.876 kb on + strand, within BWI76_RS05130 at 1078.977 kb on + strand, within BWI76_RS05130 at 1079.052 kb on + strand, within BWI76_RS05130 at 1079.425 kb on + strand, within BWI76_RS05135 at 1079.502 kb on - strand, within BWI76_RS05135
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 1,078,533 + BWI76_RS05130 0.19 -0.9 1,078,686 - BWI76_RS05130 0.38 -0.5 1,078,786 + BWI76_RS05130 0.50 -0.5 1,078,794 - BWI76_RS05130 0.51 -1.3 1,078,876 + BWI76_RS05130 0.62 -0.5 1,078,977 + BWI76_RS05130 0.74 -0.7 1,079,052 + BWI76_RS05130 0.84 -1.1 1,079,425 + BWI76_RS05135 0.27 -0.9 1,079,502 - BWI76_RS05135 0.36 -1.4
Or see this region's nucleotide sequence