Experiment: RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS01600 and BWI76_RS01605 overlap by 4 nucleotides BWI76_RS01605 and BWI76_RS01610 overlap by 4 nucleotides
BWI76_RS01600: BWI76_RS01600 - sensor protein ZraS, at 323,808 to 325,196
_RS01600
BWI76_RS01605: BWI76_RS01605 - transcriptional regulatory protein ZraR, at 325,193 to 326,524
_RS01605
BWI76_RS01610: BWI76_RS01610 - phosphoribosylamine--glycine ligase, at 326,521 to 327,813
_RS01610
Position (kb) 325
326
327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 324.314 kb on + strand, within BWI76_RS01600 at 324.447 kb on + strand, within BWI76_RS01600 at 324.455 kb on - strand, within BWI76_RS01600 at 324.460 kb on - strand, within BWI76_RS01600 at 324.601 kb on - strand, within BWI76_RS01600 at 324.645 kb on + strand, within BWI76_RS01600 at 324.652 kb on - strand, within BWI76_RS01600 at 324.908 kb on - strand, within BWI76_RS01600 at 324.934 kb on - strand, within BWI76_RS01600 at 324.992 kb on + strand, within BWI76_RS01600 at 325.062 kb on - strand at 325.095 kb on - strand at 325.250 kb on + strand at 325.329 kb on + strand, within BWI76_RS01605 at 325.435 kb on + strand, within BWI76_RS01605 at 325.443 kb on - strand, within BWI76_RS01605 at 325.450 kb on + strand, within BWI76_RS01605 at 325.453 kb on - strand, within BWI76_RS01605 at 325.495 kb on + strand, within BWI76_RS01605 at 325.528 kb on + strand, within BWI76_RS01605 at 325.606 kb on + strand, within BWI76_RS01605 at 325.643 kb on + strand, within BWI76_RS01605 at 325.736 kb on - strand, within BWI76_RS01605 at 325.812 kb on + strand, within BWI76_RS01605 at 325.901 kb on - strand, within BWI76_RS01605 at 325.976 kb on + strand, within BWI76_RS01605 at 326.186 kb on - strand at 326.212 kb on - strand, within BWI76_RS01605 at 326.233 kb on - strand, within BWI76_RS01605 at 326.669 kb on - strand, within BWI76_RS01610 at 326.977 kb on - strand, within BWI76_RS01610 at 327.022 kb on - strand, within BWI76_RS01610 at 327.081 kb on + strand, within BWI76_RS01610 at 327.113 kb on - strand, within BWI76_RS01610 at 327.206 kb on + strand, within BWI76_RS01610 at 327.516 kb on + strand, within BWI76_RS01610
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5 x remove 324,314 + BWI76_RS01600 0.36 -0.9 324,447 + BWI76_RS01600 0.46 -0.4 324,455 - BWI76_RS01600 0.47 -0.1 324,460 - BWI76_RS01600 0.47 -0.2 324,601 - BWI76_RS01600 0.57 -0.1 324,645 + BWI76_RS01600 0.60 +0.0 324,652 - BWI76_RS01600 0.61 -0.0 324,908 - BWI76_RS01600 0.79 +0.8 324,934 - BWI76_RS01600 0.81 -0.3 324,992 + BWI76_RS01600 0.85 +0.3 325,062 - -1.1 325,095 - +0.1 325,250 + +0.2 325,329 + BWI76_RS01605 0.10 +0.3 325,435 + BWI76_RS01605 0.18 -0.2 325,443 - BWI76_RS01605 0.19 +0.8 325,450 + BWI76_RS01605 0.19 +0.3 325,453 - BWI76_RS01605 0.20 +0.0 325,495 + BWI76_RS01605 0.23 +0.1 325,528 + BWI76_RS01605 0.25 +0.1 325,606 + BWI76_RS01605 0.31 -0.8 325,643 + BWI76_RS01605 0.34 +0.8 325,736 - BWI76_RS01605 0.41 +0.7 325,812 + BWI76_RS01605 0.46 +1.0 325,901 - BWI76_RS01605 0.53 +0.1 325,976 + BWI76_RS01605 0.59 +0.6 326,186 - +1.4 326,212 - BWI76_RS01605 0.77 +0.7 326,233 - BWI76_RS01605 0.78 +0.5 326,669 - BWI76_RS01610 0.11 -2.4 326,977 - BWI76_RS01610 0.35 -2.5 327,022 - BWI76_RS01610 0.39 -3.7 327,081 + BWI76_RS01610 0.43 -2.4 327,113 - BWI76_RS01610 0.46 -2.0 327,206 + BWI76_RS01610 0.53 -3.8 327,516 + BWI76_RS01610 0.77 -3.5
Or see this region's nucleotide sequence