Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21000

Experiment: Recovery broth with Streptomycin 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS17215 and BBR_RS17220 are separated by 63 nucleotidesBBR_RS17220 and BBR_RS21000 are separated by 358 nucleotidesBBR_RS21000 and BBR_RS17225 overlap by 68 nucleotides BBR_RS17215: BBR_RS17215 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,640,812 to 1,641,621 _RS17215 BBR_RS17220: BBR_RS17220 - thiamine-binding protein, at 1,641,685 to 1,642,062 _RS17220 BBR_RS21000: BBR_RS21000 - hypothetical protein, at 1,642,421 to 1,642,654 _RS21000 BBR_RS17225: BBR_RS17225 - MFS transporter, at 1,642,587 to 1,643,966 _RS17225 Position (kb) 1642 1643Strain fitness (log2 ratio) -2 -1 0 1 2at 1641.485 kb on + strand, within BBR_RS17215at 1641.513 kb on + strand, within BBR_RS17215at 1641.513 kb on + strand, within BBR_RS17215at 1641.513 kb on + strand, within BBR_RS17215at 1641.521 kb on - strand, within BBR_RS17215at 1641.521 kb on - strand, within BBR_RS17215at 1641.521 kb on - strand, within BBR_RS17215at 1641.553 kb on + strandat 1641.563 kb on - strandat 1641.575 kb on - strandat 1641.635 kb on - strandat 1641.643 kb on + strandat 1641.643 kb on + strandat 1641.658 kb on + strandat 1641.666 kb on - strandat 1641.688 kb on + strandat 1641.698 kb on + strandat 1641.718 kb on + strandat 1641.748 kb on + strand, within BBR_RS17220at 1641.750 kb on + strand, within BBR_RS17220at 1641.758 kb on - strand, within BBR_RS17220at 1641.766 kb on + strand, within BBR_RS17220at 1641.777 kb on - strand, within BBR_RS17220at 1641.780 kb on + strand, within BBR_RS17220at 1641.808 kb on - strand, within BBR_RS17220at 1641.869 kb on - strand, within BBR_RS17220at 1641.871 kb on + strand, within BBR_RS17220at 1641.873 kb on + strand, within BBR_RS17220at 1641.904 kb on + strand, within BBR_RS17220at 1641.906 kb on + strand, within BBR_RS17220at 1641.913 kb on - strand, within BBR_RS17220at 1641.967 kb on - strand, within BBR_RS17220at 1641.967 kb on - strand, within BBR_RS17220at 1642.003 kb on - strand, within BBR_RS17220at 1642.025 kb on - strandat 1642.026 kb on + strandat 1642.081 kb on + strandat 1642.086 kb on + strandat 1642.092 kb on + strandat 1642.145 kb on + strandat 1642.166 kb on - strandat 1642.246 kb on + strandat 1642.260 kb on - strandat 1642.306 kb on - strandat 1642.312 kb on + strandat 1642.321 kb on + strandat 1642.321 kb on + strandat 1642.349 kb on - strandat 1642.416 kb on - strandat 1642.436 kb on - strandat 1642.482 kb on + strand, within BBR_RS21000at 1642.518 kb on - strand, within BBR_RS21000at 1642.539 kb on + strand, within BBR_RS21000at 1642.539 kb on + strand, within BBR_RS21000at 1642.602 kb on - strandat 1642.639 kb on + strandat 1642.673 kb on + strandat 1642.675 kb on - strandat 1642.752 kb on + strand, within BBR_RS17225at 1642.774 kb on + strand, within BBR_RS17225at 1642.774 kb on + strand, within BBR_RS17225at 1642.822 kb on + strand, within BBR_RS17225at 1642.822 kb on + strand, within BBR_RS17225at 1642.830 kb on - strand, within BBR_RS17225at 1642.853 kb on - strand, within BBR_RS17225at 1642.903 kb on + strand, within BBR_RS17225at 1642.916 kb on - strand, within BBR_RS17225at 1642.988 kb on + strand, within BBR_RS17225at 1642.988 kb on + strand, within BBR_RS17225at 1642.999 kb on + strand, within BBR_RS17225at 1643.003 kb on + strand, within BBR_RS17225at 1643.097 kb on + strand, within BBR_RS17225at 1643.105 kb on - strand, within BBR_RS17225at 1643.110 kb on + strand, within BBR_RS17225at 1643.129 kb on + strand, within BBR_RS17225at 1643.151 kb on + strand, within BBR_RS17225at 1643.151 kb on + strand, within BBR_RS17225at 1643.151 kb on + strand, within BBR_RS17225at 1643.156 kb on + strand, within BBR_RS17225at 1643.159 kb on + strand, within BBR_RS17225at 1643.159 kb on - strand, within BBR_RS17225at 1643.159 kb on - strand, within BBR_RS17225at 1643.161 kb on - strand, within BBR_RS17225at 1643.169 kb on - strand, within BBR_RS17225at 1643.183 kb on - strand, within BBR_RS17225at 1643.196 kb on - strand, within BBR_RS17225at 1643.206 kb on - strand, within BBR_RS17225at 1643.206 kb on - strand, within BBR_RS17225at 1643.220 kb on - strand, within BBR_RS17225at 1643.236 kb on - strand, within BBR_RS17225at 1643.254 kb on + strand, within BBR_RS17225at 1643.277 kb on + strand, within BBR_RS17225at 1643.285 kb on - strand, within BBR_RS17225at 1643.318 kb on + strand, within BBR_RS17225at 1643.332 kb on + strand, within BBR_RS17225at 1643.332 kb on + strand, within BBR_RS17225at 1643.340 kb on - strand, within BBR_RS17225at 1643.340 kb on - strand, within BBR_RS17225at 1643.340 kb on - strand, within BBR_RS17225at 1643.342 kb on + strand, within BBR_RS17225at 1643.422 kb on - strand, within BBR_RS17225at 1643.453 kb on + strand, within BBR_RS17225at 1643.455 kb on + strand, within BBR_RS17225at 1643.455 kb on - strand, within BBR_RS17225at 1643.492 kb on - strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.500 kb on + strand, within BBR_RS17225at 1643.508 kb on - strand, within BBR_RS17225at 1643.508 kb on - strand, within BBR_RS17225at 1643.508 kb on - strand, within BBR_RS17225at 1643.518 kb on - strand, within BBR_RS17225at 1643.546 kb on - strand, within BBR_RS17225at 1643.580 kb on - strand, within BBR_RS17225at 1643.648 kb on + strand, within BBR_RS17225at 1643.651 kb on - strand, within BBR_RS17225

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Streptomycin 0.3 mM
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1,641,485 + BBR_RS17215 0.83 +0.6
1,641,513 + BBR_RS17215 0.87 -0.4
1,641,513 + BBR_RS17215 0.87 +0.5
1,641,513 + BBR_RS17215 0.87 -0.8
1,641,521 - BBR_RS17215 0.88 +0.4
1,641,521 - BBR_RS17215 0.88 +0.1
1,641,521 - BBR_RS17215 0.88 +0.3
1,641,553 + -0.1
1,641,563 - +1.1
1,641,575 - +0.4
1,641,635 - +1.7
1,641,643 + -0.4
1,641,643 + +0.2
1,641,658 + -0.1
1,641,666 - +0.1
1,641,688 + +0.8
1,641,698 + +2.1
1,641,718 + -0.6
1,641,748 + BBR_RS17220 0.17 +1.7
1,641,750 + BBR_RS17220 0.17 -1.6
1,641,758 - BBR_RS17220 0.19 -0.9
1,641,766 + BBR_RS17220 0.21 -0.6
1,641,777 - BBR_RS17220 0.24 +1.4
1,641,780 + BBR_RS17220 0.25 +1.9
1,641,808 - BBR_RS17220 0.33 -1.5
1,641,869 - BBR_RS17220 0.49 +1.2
1,641,871 + BBR_RS17220 0.49 -0.5
1,641,873 + BBR_RS17220 0.50 -0.3
1,641,904 + BBR_RS17220 0.58 -0.7
1,641,906 + BBR_RS17220 0.58 +0.2
1,641,913 - BBR_RS17220 0.60 +0.1
1,641,967 - BBR_RS17220 0.75 +1.5
1,641,967 - BBR_RS17220 0.75 +0.1
1,642,003 - BBR_RS17220 0.84 -0.1
1,642,025 - +0.8
1,642,026 + +0.3
1,642,081 + -0.0
1,642,086 + +0.8
1,642,092 + +1.1
1,642,145 + +0.5
1,642,166 - -0.0
1,642,246 + +2.6
1,642,260 - +0.1
1,642,306 - +0.1
1,642,312 + -2.5
1,642,321 + -0.9
1,642,321 + +0.8
1,642,349 - -0.5
1,642,416 - -1.5
1,642,436 - +1.0
1,642,482 + BBR_RS21000 0.26 -0.0
1,642,518 - BBR_RS21000 0.41 -1.6
1,642,539 + BBR_RS21000 0.50 -0.3
1,642,539 + BBR_RS21000 0.50 +0.9
1,642,602 - -0.4
1,642,639 + +1.1
1,642,673 + -0.7
1,642,675 - +0.1
1,642,752 + BBR_RS17225 0.12 -2.2
1,642,774 + BBR_RS17225 0.14 +0.6
1,642,774 + BBR_RS17225 0.14 +1.1
1,642,822 + BBR_RS17225 0.17 +0.6
1,642,822 + BBR_RS17225 0.17 +0.3
1,642,830 - BBR_RS17225 0.18 +1.3
1,642,853 - BBR_RS17225 0.19 +0.4
1,642,903 + BBR_RS17225 0.23 -0.7
1,642,916 - BBR_RS17225 0.24 +0.3
1,642,988 + BBR_RS17225 0.29 +0.4
1,642,988 + BBR_RS17225 0.29 -0.5
1,642,999 + BBR_RS17225 0.30 -0.6
1,643,003 + BBR_RS17225 0.30 +0.9
1,643,097 + BBR_RS17225 0.37 -0.1
1,643,105 - BBR_RS17225 0.38 -0.2
1,643,110 + BBR_RS17225 0.38 +1.5
1,643,129 + BBR_RS17225 0.39 +0.4
1,643,151 + BBR_RS17225 0.41 +0.8
1,643,151 + BBR_RS17225 0.41 +1.6
1,643,151 + BBR_RS17225 0.41 -2.2
1,643,156 + BBR_RS17225 0.41 +0.4
1,643,159 + BBR_RS17225 0.41 +0.3
1,643,159 - BBR_RS17225 0.41 -0.7
1,643,159 - BBR_RS17225 0.41 -0.6
1,643,161 - BBR_RS17225 0.42 +0.3
1,643,169 - BBR_RS17225 0.42 -0.5
1,643,183 - BBR_RS17225 0.43 +1.5
1,643,196 - BBR_RS17225 0.44 -0.5
1,643,206 - BBR_RS17225 0.45 -0.7
1,643,206 - BBR_RS17225 0.45 -0.0
1,643,220 - BBR_RS17225 0.46 +2.1
1,643,236 - BBR_RS17225 0.47 +0.0
1,643,254 + BBR_RS17225 0.48 +1.1
1,643,277 + BBR_RS17225 0.50 -0.6
1,643,285 - BBR_RS17225 0.51 -0.0
1,643,318 + BBR_RS17225 0.53 +0.0
1,643,332 + BBR_RS17225 0.54 -0.7
1,643,332 + BBR_RS17225 0.54 -0.0
1,643,340 - BBR_RS17225 0.55 +0.1
1,643,340 - BBR_RS17225 0.55 -0.1
1,643,340 - BBR_RS17225 0.55 +0.2
1,643,342 + BBR_RS17225 0.55 -0.9
1,643,422 - BBR_RS17225 0.61 -0.2
1,643,453 + BBR_RS17225 0.63 -2.2
1,643,455 + BBR_RS17225 0.63 +0.1
1,643,455 - BBR_RS17225 0.63 -0.9
1,643,492 - BBR_RS17225 0.66 +0.4
1,643,500 + BBR_RS17225 0.66 +0.5
1,643,500 + BBR_RS17225 0.66 -0.6
1,643,500 + BBR_RS17225 0.66 +0.0
1,643,500 + BBR_RS17225 0.66 -1.0
1,643,500 + BBR_RS17225 0.66 -1.2
1,643,500 + BBR_RS17225 0.66 +0.9
1,643,500 + BBR_RS17225 0.66 -0.5
1,643,500 + BBR_RS17225 0.66 -1.1
1,643,500 + BBR_RS17225 0.66 +0.4
1,643,508 - BBR_RS17225 0.67 -0.0
1,643,508 - BBR_RS17225 0.67 +0.4
1,643,508 - BBR_RS17225 0.67 -0.3
1,643,518 - BBR_RS17225 0.67 +2.4
1,643,546 - BBR_RS17225 0.69 -1.9
1,643,580 - BBR_RS17225 0.72 -2.1
1,643,648 + BBR_RS17225 0.77 -1.2
1,643,651 - BBR_RS17225 0.77 -1.5

Or see this region's nucleotide sequence