Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18220

Experiment: Recovery broth with Streptomycin 0.3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Streptomycin 0.3 mM
1,874,460	-		BBR_RS18215	0.42	-0.8
1,874,460	-		BBR_RS18215	0.42	+3.2
1,874,553	-		BBR_RS18215	0.48	+2.8
1,874,555	-		BBR_RS18215	0.48	-1.3
1,874,622	-		BBR_RS18215	0.53	-1.6
1,874,685	-		BBR_RS18215	0.56	+3.1
1,874,781	-		BBR_RS18215	0.63	+0.9
1,874,834	-		BBR_RS18215	0.66	+0.5
1,874,971	+		BBR_RS18215	0.74	+1.9
1,874,971	+		BBR_RS18215	0.74	-0.9
1,874,971	+		BBR_RS18215	0.74	+2.0
1,874,971	+		BBR_RS18215	0.74	+0.7
1,874,971	+		BBR_RS18215	0.74	+1.2
1,874,971	+		BBR_RS18215	0.74	+2.3
1,874,971	+		BBR_RS18215	0.74	+3.0
1,874,979	-		BBR_RS18215	0.75	+3.3
1,874,979	-		BBR_RS18215	0.75	+2.6
1,874,979	-		BBR_RS18215	0.75	+3.4
1,874,979	-		BBR_RS18215	0.75	+2.2
1,875,051	-		BBR_RS18215	0.79	+3.9
1,875,065	-		BBR_RS18215	0.80	+1.7
1,875,106	+		BBR_RS18215	0.83	+3.1
1,875,124	-		BBR_RS18215	0.84	+0.3
1,875,184	-		BBR_RS18215	0.88	+1.1
1,875,231	-				+3.7
1,875,236	-				+3.5
1,875,236	-				+2.9
1,875,279	-				+3.2
1,875,279	-				+2.0
1,875,279	-				-0.8
1,875,288	-				+3.9
1,875,309	-				+1.3
1,875,389	+				-0.7
1,875,392	-				-0.2
1,875,399	+				-0.3
1,875,417	+				+2.1
1,875,425	+				-2.3
1,875,425	+				-0.4
1,875,425	+				-0.1
1,875,425	+				+2.3
1,875,446	+				+2.5
1,875,493	+				-1.2
1,875,500	-				-1.1
1,875,523	-				-1.4
1,875,525	-				+1.2
1,875,529	+				+0.3
1,875,533	-				+0.6
1,875,545	-				-0.4
1,875,547	-				+0.3
1,875,547	-				+0.5
1,875,547	-				+0.3
1,875,547	-				+1.0
1,875,547	-				-0.3
1,875,565	+		BBR_RS18220	0.12	-1.1
1,875,589	-		BBR_RS18220	0.14	-0.4
1,875,604	-		BBR_RS18220	0.16	+0.5
1,875,604	-		BBR_RS18220	0.16	-1.2
1,875,605	-		BBR_RS18220	0.16	-1.7
1,875,628	-		BBR_RS18220	0.19	-1.2
1,875,642	-		BBR_RS18220	0.20	-1.8
1,875,649	-		BBR_RS18220	0.21	-0.3
1,875,692	-		BBR_RS18220	0.26	-0.2
1,875,715	+		BBR_RS18220	0.28	-0.5
1,875,798	-		BBR_RS18220	0.37	-0.9
1,875,809	+		BBR_RS18220	0.38	-0.1
1,875,815	-		BBR_RS18220	0.39	-0.3
1,875,818	+		BBR_RS18220	0.39	+0.3
1,875,841	-		BBR_RS18220	0.42	-1.7
1,875,844	-		BBR_RS18220	0.42	-0.2
1,875,846	+		BBR_RS18220	0.42	-0.3
1,875,846	+		BBR_RS18220	0.42	-1.4
1,875,867	+		BBR_RS18220	0.44	-1.5
1,875,925	+		BBR_RS18220	0.51	+2.0
1,875,932	+		BBR_RS18220	0.51	-1.1
1,875,971	-		BBR_RS18220	0.56	-0.2
1,875,979	+		BBR_RS18220	0.57	+0.1
1,876,022	+		BBR_RS18220	0.61	-0.0
1,876,022	+		BBR_RS18220	0.61	-0.6
1,876,037	+		BBR_RS18220	0.63	+1.0
1,876,038	-		BBR_RS18220	0.63	+0.5
1,876,046	+		BBR_RS18220	0.64	-0.3
1,876,055	-		BBR_RS18220	0.65	+0.3
1,876,102	+		BBR_RS18220	0.70	-0.8
1,876,107	+		BBR_RS18220	0.70	+1.4
1,876,151	-		BBR_RS18220	0.75	-0.0
1,876,157	+		BBR_RS18220	0.76	-1.2
1,876,182	-		BBR_RS18220	0.78	-2.0
1,876,212	-		BBR_RS18220	0.82	+1.1
1,876,212	-		BBR_RS18220	0.82	-1.4
1,876,217	+		BBR_RS18220	0.82	+2.2
1,876,217	+		BBR_RS18220	0.82	+0.0
1,876,222	+		BBR_RS18220	0.83	+0.0
1,876,222	+		BBR_RS18220	0.83	+0.9
1,876,222	+		BBR_RS18220	0.83	-0.4
1,876,227	+		BBR_RS18220	0.83	+1.2
1,876,230	-		BBR_RS18220	0.84	+0.1
1,876,230	-		BBR_RS18220	0.84	-0.4
1,876,230	-		BBR_RS18220	0.84	-1.5
1,876,235	-		BBR_RS18220	0.84	-0.3
1,876,244	+		BBR_RS18220	0.85	-0.9
1,876,246	+		BBR_RS18220	0.85	-1.1
1,876,252	-		BBR_RS18220	0.86	-0.4
1,876,256	+		BBR_RS18220	0.86	+0.1
1,876,262	-		BBR_RS18220	0.87	+0.6
1,876,262	-		BBR_RS18220	0.87	+0.0
1,876,270	+		BBR_RS18220	0.88	+1.4
1,876,314	-				+0.0
1,876,314	-				-0.2
1,876,327	+				-0.8
1,876,327	+				-1.8
1,876,327	+				+0.5
1,876,335	-				-0.8
1,876,335	-				-1.8
1,876,349	+				-1.1
1,876,354	+				-1.7
1,876,362	-				-0.1
1,876,363	-				-0.8
1,876,401	+				+0.6
1,876,401	-				+1.8
1,876,401	-				+0.5
1,876,401	-				-0.8
1,876,446	-				+0.5
1,876,474	-				-0.1
1,876,505	-				+0.7
1,876,515	+				-0.2
1,876,530	+				+0.5
1,876,530	+				+0.1
1,876,530	+				+1.6
1,876,530	+				+0.5
1,876,530	+				+1.7
1,876,547	+				+0.9
1,876,577	-				+0.6
1,876,625	-				+0.5
1,876,634	-		BBR_RS18225	0.10	+0.7
1,876,638	-		BBR_RS18225	0.11	-0.3
1,876,643	-		BBR_RS18225	0.11	-0.8
1,876,664	+		BBR_RS18225	0.13	-0.7
1,876,664	+		BBR_RS18225	0.13	-0.9
1,876,672	-		BBR_RS18225	0.13	-0.3
1,876,679	-		BBR_RS18225	0.14	+1.6
1,876,679	-		BBR_RS18225	0.14	+0.3
1,876,682	+		BBR_RS18225	0.14	-0.5
1,876,691	+		BBR_RS18225	0.15	+1.5
1,876,736	+		BBR_RS18225	0.19	-0.3
1,876,741	+		BBR_RS18225	0.19	+0.6
1,876,748	+		BBR_RS18225	0.20	+0.9
1,876,755	-		BBR_RS18225	0.21	-0.8
1,876,785	+		BBR_RS18225	0.23	-2.3
1,876,785	+		BBR_RS18225	0.23	+0.6
1,876,809	+		BBR_RS18225	0.25	+1.3
1,876,817	+		BBR_RS18225	0.26	-1.0
1,876,832	+		BBR_RS18225	0.27	+0.8
1,876,839	-		BBR_RS18225	0.28	+0.9
1,876,846	-		BBR_RS18225	0.29	+0.1
1,876,846	-		BBR_RS18225	0.29	+0.5
1,876,847	-		BBR_RS18225	0.29	-1.3
1,876,847	-		BBR_RS18225	0.29	+1.5
1,876,880	+		BBR_RS18225	0.32	+1.0
1,876,880	+		BBR_RS18225	0.32	+0.4
1,876,893	-		BBR_RS18225	0.33	+0.2
1,876,908	+		BBR_RS18225	0.34	+0.1
1,876,910	-		BBR_RS18225	0.34	+2.0
1,876,910	-		BBR_RS18225	0.34	+0.5
1,876,915	-		BBR_RS18225	0.35	+0.3
1,876,927	+		BBR_RS18225	0.36	+0.2
1,876,933	-		BBR_RS18225	0.36	+1.0
1,876,935	-		BBR_RS18225	0.36	+0.6
1,876,942	-		BBR_RS18225	0.37	+0.2
1,876,942	-		BBR_RS18225	0.37	-1.0
1,876,998	+		BBR_RS18225	0.42	+1.8
1,877,023	+		BBR_RS18225	0.44	-0.0
1,877,033	-		BBR_RS18225	0.45	+0.9
1,877,035	-		BBR_RS18225	0.45	-0.3
1,877,036	+		BBR_RS18225	0.45	+0.0
1,877,052	-		BBR_RS18225	0.46	+0.3
1,877,058	-		BBR_RS18225	0.47	-1.1
1,877,058	-		BBR_RS18225	0.47	+0.4
1,877,058	-		BBR_RS18225	0.47	-0.7
1,877,062	-		BBR_RS18225	0.47	-0.7
1,877,063	-		BBR_RS18225	0.47	-1.4
1,877,070	+		BBR_RS18225	0.48	+1.5
1,877,083	-		BBR_RS18225	0.49	+1.6
1,877,092	-		BBR_RS18225	0.50	-0.7
1,877,092	-		BBR_RS18225	0.50	-0.8
1,877,101	+		BBR_RS18225	0.51	-1.4
1,877,101	+		BBR_RS18225	0.51	-0.4
1,877,101	+		BBR_RS18225	0.51	-0.5
1,877,101	+		BBR_RS18225	0.51	-1.2
1,877,101	+		BBR_RS18225	0.51	+1.7
1,877,101	+		BBR_RS18225	0.51	-2.8
1,877,101	+		BBR_RS18225	0.51	+0.1
1,877,109	-		BBR_RS18225	0.51	+0.3
1,877,109	-		BBR_RS18225	0.51	-0.1
1,877,109	-		BBR_RS18225	0.51	+1.1
1,877,109	-		BBR_RS18225	0.51	+0.0
1,877,109	-		BBR_RS18225	0.51	+1.2
1,877,116	+		BBR_RS18225	0.52	+0.6
1,877,116	+		BBR_RS18225	0.52	+2.5
1,877,126	+		BBR_RS18225	0.53	+0.9
1,877,126	+		BBR_RS18225	0.53	+0.2
1,877,172	-		BBR_RS18225	0.57	-0.9
1,877,184	+		BBR_RS18225	0.58	-0.6
1,877,184	+		BBR_RS18225	0.58	+0.5
1,877,192	-		BBR_RS18225	0.59	-1.2
1,877,220	-		BBR_RS18225	0.61	+0.3
1,877,227	-		BBR_RS18225	0.62	+0.2
1,877,229	+		BBR_RS18225	0.62	-0.2
1,877,237	+		BBR_RS18225	0.62	+1.3
1,877,285	-		BBR_RS18225	0.67	-1.0
1,877,285	-		BBR_RS18225	0.67	+1.5
1,877,301	+		BBR_RS18225	0.68	+0.9
1,877,301	+		BBR_RS18225	0.68	+1.6
1,877,303	+		BBR_RS18225	0.68	+0.4
1,877,320	-		BBR_RS18225	0.70	+0.7
1,877,321	+		BBR_RS18225	0.70	+1.3
1,877,364	-		BBR_RS18225	0.74	-0.5
1,877,369	-		BBR_RS18225	0.74	+0.9