Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17850

Experiment: Recovery broth with Streptomycin 0.3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Streptomycin 0.3 mM
1,782,153	+				+1.9
1,782,159	+				-0.5
1,782,161	-				-0.1
1,782,215	-				+1.6
1,782,215	-				+0.9
1,782,257	-				-0.3
1,782,291	+				-0.5
1,782,337	+		BBR_RS17845	0.17	+0.8
1,782,345	-		BBR_RS17845	0.18	+1.2
1,782,354	+		BBR_RS17845	0.19	-0.7
1,782,360	-		BBR_RS17845	0.20	-0.4
1,782,362	-		BBR_RS17845	0.21	+0.8
1,782,362	-		BBR_RS17845	0.21	-0.5
1,782,368	-		BBR_RS17845	0.22	-0.1
1,782,433	+		BBR_RS17845	0.31	-0.7
1,782,433	+		BBR_RS17845	0.31	+0.9
1,782,433	+		BBR_RS17845	0.31	+0.1
1,782,441	-		BBR_RS17845	0.33	+1.6
1,782,441	-		BBR_RS17845	0.33	-0.5
1,782,450	+		BBR_RS17845	0.34	+1.0
1,782,450	+		BBR_RS17845	0.34	-0.5
1,782,458	-		BBR_RS17845	0.35	-1.5
1,782,513	+		BBR_RS17845	0.44	-0.7
1,782,513	+		BBR_RS17845	0.44	+0.6
1,782,521	-		BBR_RS17845	0.45	-0.8
1,782,521	-		BBR_RS17845	0.45	+1.8
1,782,522	+		BBR_RS17845	0.45	+0.4
1,782,570	+		BBR_RS17845	0.52	+1.0
1,782,570	+		BBR_RS17845	0.52	-0.2
1,782,576	+		BBR_RS17845	0.53	-0.2
1,782,636	-		BBR_RS17845	0.63	+0.4
1,782,683	+		BBR_RS17845	0.70	+2.9
1,782,683	+		BBR_RS17845	0.70	-1.0
1,782,691	-		BBR_RS17845	0.71	+0.4
1,782,691	-		BBR_RS17845	0.71	-0.6
1,782,711	-		BBR_RS17845	0.74	+0.1
1,782,778	-		BBR_RS17845	0.84	-0.2
1,782,860	+				+0.7
1,782,860	+				+0.8
1,782,898	-				+0.5
1,782,991	+				-1.2
1,782,998	-				+1.0
1,783,016	+				+0.0
1,783,050	-				+0.7
1,783,056	+				+0.1
1,783,087	+				-0.9
1,783,087	-				+0.8
1,783,087	-				+0.4
1,783,089	-				+0.8
1,783,089	-				+1.3
1,783,094	+				+0.6
1,783,094	+				-0.0
1,783,094	+				-0.1
1,783,094	+				-1.0
1,783,094	+				+1.2
1,783,096	+				+1.6
1,783,096	+				+0.0
1,783,096	+				+0.9
1,783,102	+				-0.2
1,783,102	-				-1.5
1,783,104	-				+0.6
1,783,104	-				+0.2
1,783,110	-				+0.3
1,783,122	+				-0.3
1,783,122	+				+0.9
1,783,126	+				-0.6
1,783,126	+				-0.7
1,783,160	+				+0.1
1,783,162	+				-0.5
1,783,168	-				-1.7
1,783,185	+				+1.0
1,783,193	-				+0.1
1,783,193	-				+0.6
1,783,250	-				-1.9
1,783,304	+				-0.7
1,783,304	+				+0.3
1,783,310	+				+0.0
1,783,313	-				-0.9
1,783,328	-		BBR_RS17850	0.10	-0.6
1,783,333	+		BBR_RS17850	0.10	+0.4
1,783,341	-		BBR_RS17850	0.11	+0.0
1,783,366	-		BBR_RS17850	0.12	+0.1
1,783,367	+		BBR_RS17850	0.12	+0.3
1,783,367	+		BBR_RS17850	0.12	-1.8
1,783,367	+		BBR_RS17850	0.12	-0.9
1,783,375	-		BBR_RS17850	0.13	-0.1
1,783,375	-		BBR_RS17850	0.13	-0.7
1,783,375	-		BBR_RS17850	0.13	-0.3
1,783,375	-		BBR_RS17850	0.13	-2.2
1,783,377	+		BBR_RS17850	0.13	-0.2
1,783,385	-		BBR_RS17850	0.13	-1.7
1,783,385	-		BBR_RS17850	0.13	+0.3
1,783,412	+		BBR_RS17850	0.14	-1.4
1,783,412	+		BBR_RS17850	0.14	+0.1
1,783,412	-		BBR_RS17850	0.14	-0.2
1,783,420	-		BBR_RS17850	0.15	+0.6
1,783,471	-		BBR_RS17850	0.18	-0.5
1,783,505	-		BBR_RS17850	0.19	+0.7
1,783,510	-		BBR_RS17850	0.20	-0.1
1,783,511	+		BBR_RS17850	0.20	-0.7
1,783,520	-		BBR_RS17850	0.20	-0.5
1,783,538	-		BBR_RS17850	0.21	-3.8
1,783,542	+		BBR_RS17850	0.21	-1.9
1,783,552	+		BBR_RS17850	0.22	-0.6
1,783,557	+		BBR_RS17850	0.22	+0.5
1,783,560	-		BBR_RS17850	0.22	-0.4
1,783,589	+		BBR_RS17850	0.24	-1.7
1,783,597	-		BBR_RS17850	0.24	+0.6
1,783,639	+		BBR_RS17850	0.26	-0.8
1,783,649	-		BBR_RS17850	0.27	+3.2
1,783,649	-		BBR_RS17850	0.27	+0.1
1,783,651	-		BBR_RS17850	0.27	-2.1
1,783,692	+		BBR_RS17850	0.29	+0.4
1,783,705	+		BBR_RS17850	0.30	-1.7
1,783,705	+		BBR_RS17850	0.30	-1.2
1,783,708	-		BBR_RS17850	0.30	-0.9
1,783,713	-		BBR_RS17850	0.30	-2.2
1,783,713	-		BBR_RS17850	0.30	+0.1
1,783,757	-		BBR_RS17850	0.33	-1.0
1,783,757	-		BBR_RS17850	0.33	-1.2
1,783,761	-		BBR_RS17850	0.33	-0.9
1,783,821	+		BBR_RS17850	0.36	+1.8
1,783,881	-		BBR_RS17850	0.39	-1.2
1,783,928	+		BBR_RS17850	0.42	-1.7
1,783,931	-		BBR_RS17850	0.42	-0.9
1,783,972	+		BBR_RS17850	0.44	-1.1
1,783,996	+		BBR_RS17850	0.45	-0.8
1,784,004	-		BBR_RS17850	0.46	+0.8
1,784,004	-		BBR_RS17850	0.46	+0.8
1,784,019	+		BBR_RS17850	0.46	+0.8
1,784,034	-		BBR_RS17850	0.47	-0.5
1,784,039	-		BBR_RS17850	0.47	-1.8
1,784,048	-		BBR_RS17850	0.48	-1.7
1,784,101	-		BBR_RS17850	0.51	+0.7
1,784,112	+		BBR_RS17850	0.51	-1.3
1,784,167	-		BBR_RS17850	0.54	-1.4
1,784,220	-		BBR_RS17850	0.57	-1.2
1,784,226	+		BBR_RS17850	0.57	-0.9
1,784,266	+		BBR_RS17850	0.59	-0.0
1,784,274	-		BBR_RS17850	0.60	-0.1
1,784,293	-		BBR_RS17850	0.61	-0.2
1,784,370	+		BBR_RS17850	0.65	+0.1
1,784,507	-		BBR_RS17850	0.72	-1.0
1,784,509	+		BBR_RS17850	0.72	+0.3
1,784,509	+		BBR_RS17850	0.72	-0.4
1,784,517	-		BBR_RS17850	0.73	+0.4
1,784,517	-		BBR_RS17850	0.73	+0.5
1,784,517	-		BBR_RS17850	0.73	-0.2
1,784,531	-		BBR_RS17850	0.73	-0.8
1,784,566	+		BBR_RS17850	0.75	+0.3
1,784,566	+		BBR_RS17850	0.75	-1.7
1,784,611	-		BBR_RS17850	0.77	-1.4
1,784,695	-		BBR_RS17850	0.82	-0.1
1,784,702	+		BBR_RS17850	0.82	-1.4
1,784,702	+		BBR_RS17850	0.82	+0.5
1,784,702	+		BBR_RS17850	0.82	-1.9
1,784,702	+		BBR_RS17850	0.82	-0.5
1,784,710	-		BBR_RS17850	0.83	+0.6
1,784,710	-		BBR_RS17850	0.83	-0.4
1,784,723	-		BBR_RS17850	0.83	-0.5
1,784,723	-		BBR_RS17850	0.83	-1.0
1,784,758	-		BBR_RS17850	0.85	-1.1
1,784,767	+		BBR_RS17850	0.86	-1.8
1,784,768	-		BBR_RS17850	0.86	-1.2
1,784,775	-		BBR_RS17850	0.86	-1.4
1,784,822	-		BBR_RS17850	0.89	-1.0
1,784,823	+		BBR_RS17850	0.89	-1.0
1,784,831	-		BBR_RS17850	0.89	-1.4
1,784,834	-		BBR_RS17850	0.89	+0.0
1,784,846	-		BBR_RS17850	0.90	-0.6
1,784,850	+				-1.5
1,784,855	+				-1.1
1,784,863	-				-0.4
1,784,895	+				-1.5
1,784,952	+				-1.3
1,784,960	-				+0.2
1,784,973	+				-1.6
1,784,983	+				-1.7
1,785,003	-				-0.7
1,785,010	+				+0.1
1,785,022	+				-1.4
1,785,057	+				+0.0
1,785,057	+				+0.8
1,785,062	+				-0.7
1,785,065	-				-2.0
1,785,073	+				-0.1
1,785,077	-				-0.3
1,785,167	+				-1.0
1,785,168	+				+0.4
1,785,175	-				+0.1
1,785,176	-				+1.4
1,785,176	-				-0.3
1,785,182	+				+0.5
1,785,190	-				+0.7
1,785,191	-				-1.3
1,785,239	-				-0.5
1,785,267	-				-1.5
1,785,284	-				-1.4
1,785,286	-				-2.4
1,785,311	+				-0.4
1,785,335	+				-0.9
1,785,346	-				-1.1
1,785,349	+		BBR_RS17855	0.10	+0.3
1,785,366	-		BBR_RS17855	0.11	-0.1
1,785,380	-		BBR_RS17855	0.12	-1.9
1,785,381	-		BBR_RS17855	0.12	-0.7
1,785,396	-		BBR_RS17855	0.12	+0.6
1,785,396	-		BBR_RS17855	0.12	-0.7
1,785,445	+		BBR_RS17855	0.15	+1.1
1,785,447	+		BBR_RS17855	0.15	+0.4
1,785,455	-		BBR_RS17855	0.15	+2.2
1,785,455	-		BBR_RS17855	0.15	+0.8
1,785,455	-		BBR_RS17855	0.15	+0.4
1,785,455	-		BBR_RS17855	0.15	+2.2
1,785,455	-		BBR_RS17855	0.15	+0.9
1,785,457	+		BBR_RS17855	0.15	+1.0
1,785,457	+		BBR_RS17855	0.15	+4.0
1,785,465	-		BBR_RS17855	0.16	+0.4
1,785,473	+		BBR_RS17855	0.16	-1.4
1,785,473	+		BBR_RS17855	0.16	-0.1
1,785,481	-		BBR_RS17855	0.17	+0.5
1,785,483	+		BBR_RS17855	0.17	-0.3
1,785,492	+		BBR_RS17855	0.17	+1.5
1,785,492	+		BBR_RS17855	0.17	-1.0
1,785,494	-		BBR_RS17855	0.17	-0.6
1,785,500	-		BBR_RS17855	0.18	+0.2
1,785,507	+		BBR_RS17855	0.18	-0.1
1,785,516	-		BBR_RS17855	0.18	-0.2
1,785,522	+		BBR_RS17855	0.19	-0.2
1,785,535	-		BBR_RS17855	0.19	-0.2
1,785,540	+		BBR_RS17855	0.20	-0.7
1,785,541	+		BBR_RS17855	0.20	-0.5
1,785,544	+		BBR_RS17855	0.20	+0.5
1,785,554	-		BBR_RS17855	0.20	-0.1
1,785,590	+		BBR_RS17855	0.22	-0.3
1,785,592	+		BBR_RS17855	0.22	+0.3
1,785,598	-		BBR_RS17855	0.22	+0.5
1,785,621	-		BBR_RS17855	0.24	+0.7
1,785,637	+		BBR_RS17855	0.24	-0.7
1,785,652	+		BBR_RS17855	0.25	-1.8
1,785,657	+		BBR_RS17855	0.25	-0.9
1,785,660	-		BBR_RS17855	0.25	+0.9
1,785,665	-		BBR_RS17855	0.26	+0.6
1,785,678	+		BBR_RS17855	0.26	+0.8
1,785,722	-		BBR_RS17855	0.29	-0.8
1,785,728	+		BBR_RS17855	0.29	+1.3
1,785,737	+		BBR_RS17855	0.29	+0.3
1,785,746	+		BBR_RS17855	0.30	-1.7
1,785,782	+		BBR_RS17855	0.32	+1.2
1,785,787	+		BBR_RS17855	0.32	-0.7
1,785,792	+		BBR_RS17855	0.32	+0.3
1,785,812	+		BBR_RS17855	0.33	+0.5
1,785,813	-		BBR_RS17855	0.33	-0.3
1,785,820	+		BBR_RS17855	0.33	+0.2
1,785,820	+		BBR_RS17855	0.33	-3.4
1,785,820	+		BBR_RS17855	0.33	+0.5
1,785,820	+		BBR_RS17855	0.33	-1.0
1,785,820	+		BBR_RS17855	0.33	-0.7
1,785,829	+		BBR_RS17855	0.34	-1.8
1,785,850	-		BBR_RS17855	0.35	-0.6
1,785,892	-		BBR_RS17855	0.37	-1.2
1,785,952	-		BBR_RS17855	0.40	+1.1
1,785,952	-		BBR_RS17855	0.40	-1.4
1,785,971	+		BBR_RS17855	0.41	-1.0
1,785,978	-		BBR_RS17855	0.41	-0.2
1,786,007	+		BBR_RS17855	0.43	-1.9
1,786,015	-		BBR_RS17855	0.43	+0.4
1,786,017	-		BBR_RS17855	0.43	-1.3
1,786,017	-		BBR_RS17855	0.43	+0.9