Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13850

Experiment: Recovery broth with Streptomycin 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13845 and BBR_RS13850 are separated by 570 nucleotidesBBR_RS13850 and BBR_RS13855 overlap by 1 nucleotides BBR_RS13845: BBR_RS13845 - dipeptidase, at 884,527 to 885,894 _RS13845 BBR_RS13850: BBR_RS13850 - ABC transporter permease, at 886,465 to 887,064 _RS13850 BBR_RS13855: BBR_RS13855 - ABC transporter ATP-binding protein, at 887,064 to 888,536 _RS13855 Position (kb) 886 887 888Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 885.472 kb on - strand, within BBR_RS13845at 885.584 kb on + strand, within BBR_RS13845at 885.586 kb on + strand, within BBR_RS13845at 885.598 kb on + strand, within BBR_RS13845at 885.621 kb on + strand, within BBR_RS13845at 885.623 kb on + strand, within BBR_RS13845at 885.629 kb on - strand, within BBR_RS13845at 885.677 kb on - strand, within BBR_RS13845at 885.689 kb on + strand, within BBR_RS13845at 885.697 kb on - strand, within BBR_RS13845at 885.698 kb on + strand, within BBR_RS13845at 885.709 kb on + strand, within BBR_RS13845at 885.719 kb on + strand, within BBR_RS13845at 885.729 kb on + strand, within BBR_RS13845at 885.734 kb on + strand, within BBR_RS13845at 885.742 kb on - strand, within BBR_RS13845at 885.771 kb on - strandat 885.810 kb on - strandat 885.812 kb on + strandat 885.820 kb on - strandat 885.820 kb on - strandat 885.820 kb on - strandat 885.820 kb on - strandat 885.820 kb on - strandat 885.904 kb on + strandat 885.904 kb on + strandat 885.904 kb on + strandat 885.904 kb on + strandat 885.904 kb on + strandat 885.910 kb on + strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.912 kb on - strandat 885.957 kb on - strandat 886.011 kb on + strandat 886.036 kb on + strandat 886.036 kb on + strandat 886.050 kb on + strandat 886.090 kb on + strandat 886.123 kb on + strandat 886.275 kb on - strandat 886.275 kb on - strandat 886.283 kb on - strandat 886.290 kb on - strandat 886.298 kb on - strandat 886.332 kb on - strandat 886.342 kb on + strandat 886.359 kb on - strandat 886.359 kb on - strandat 886.406 kb on + strandat 886.427 kb on + strandat 886.427 kb on + strandat 886.461 kb on + strandat 886.561 kb on + strand, within BBR_RS13850at 886.572 kb on + strand, within BBR_RS13850at 886.573 kb on + strand, within BBR_RS13850at 886.590 kb on + strand, within BBR_RS13850at 886.688 kb on + strand, within BBR_RS13850at 886.691 kb on - strand, within BBR_RS13850at 886.722 kb on + strand, within BBR_RS13850at 886.751 kb on - strand, within BBR_RS13850at 886.798 kb on + strand, within BBR_RS13850at 886.844 kb on + strand, within BBR_RS13850at 886.844 kb on + strand, within BBR_RS13850at 886.844 kb on + strand, within BBR_RS13850at 886.885 kb on + strand, within BBR_RS13850at 886.890 kb on + strand, within BBR_RS13850at 886.954 kb on - strand, within BBR_RS13850at 887.066 kb on - strandat 887.069 kb on + strandat 887.166 kb on + strandat 887.173 kb on + strandat 887.278 kb on + strand, within BBR_RS13855at 887.312 kb on - strand, within BBR_RS13855at 887.312 kb on - strand, within BBR_RS13855at 887.336 kb on - strand, within BBR_RS13855at 887.379 kb on + strand, within BBR_RS13855at 887.474 kb on + strand, within BBR_RS13855at 887.545 kb on + strand, within BBR_RS13855at 887.646 kb on - strand, within BBR_RS13855at 887.690 kb on - strand, within BBR_RS13855at 887.767 kb on - strand, within BBR_RS13855at 887.856 kb on + strand, within BBR_RS13855at 887.899 kb on + strand, within BBR_RS13855at 887.907 kb on - strand, within BBR_RS13855at 887.911 kb on + strand, within BBR_RS13855at 887.972 kb on - strand, within BBR_RS13855at 887.973 kb on + strand, within BBR_RS13855at 887.975 kb on + strand, within BBR_RS13855at 887.975 kb on + strand, within BBR_RS13855at 888.008 kb on + strand, within BBR_RS13855at 888.023 kb on + strand, within BBR_RS13855

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Streptomycin 0.3 mM
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885,472 - BBR_RS13845 0.69 -0.2
885,584 + BBR_RS13845 0.77 -0.2
885,586 + BBR_RS13845 0.77 -2.2
885,598 + BBR_RS13845 0.78 +0.5
885,621 + BBR_RS13845 0.80 -0.4
885,623 + BBR_RS13845 0.80 -0.3
885,629 - BBR_RS13845 0.81 +2.9
885,677 - BBR_RS13845 0.84 -0.7
885,689 + BBR_RS13845 0.85 -3.1
885,697 - BBR_RS13845 0.86 -0.8
885,698 + BBR_RS13845 0.86 -0.1
885,709 + BBR_RS13845 0.86 +1.0
885,719 + BBR_RS13845 0.87 +1.4
885,729 + BBR_RS13845 0.88 -2.5
885,734 + BBR_RS13845 0.88 -0.1
885,742 - BBR_RS13845 0.89 -0.1
885,771 - +0.5
885,810 - +1.0
885,812 + +0.2
885,820 - +0.4
885,820 - -0.5
885,820 - -0.4
885,820 - -1.4
885,820 - +4.2
885,904 + +0.3
885,904 + +1.0
885,904 + -0.6
885,904 + +0.8
885,904 + +0.7
885,910 + +0.8
885,912 - +1.1
885,912 - +1.5
885,912 - -1.8
885,912 - -2.1
885,912 - -0.8
885,912 - +0.0
885,912 - +1.0
885,912 - +1.0
885,912 - +1.0
885,912 - -0.0
885,957 - +0.5
886,011 + -0.9
886,036 + +0.1
886,036 + -1.0
886,050 + +0.3
886,090 + +1.1
886,123 + -1.2
886,275 - +0.7
886,275 - -0.6
886,283 - +0.1
886,290 - +0.2
886,298 - +0.9
886,332 - -1.0
886,342 + +1.3
886,359 - -1.6
886,359 - +0.6
886,406 + -0.9
886,427 + +0.1
886,427 + +0.6
886,461 + -1.0
886,561 + BBR_RS13850 0.16 +0.2
886,572 + BBR_RS13850 0.18 -2.6
886,573 + BBR_RS13850 0.18 -0.3
886,590 + BBR_RS13850 0.21 +0.7
886,688 + BBR_RS13850 0.37 -1.7
886,691 - BBR_RS13850 0.38 -1.5
886,722 + BBR_RS13850 0.43 -0.4
886,751 - BBR_RS13850 0.48 +0.7
886,798 + BBR_RS13850 0.56 -2.7
886,844 + BBR_RS13850 0.63 -1.1
886,844 + BBR_RS13850 0.63 +0.2
886,844 + BBR_RS13850 0.63 -0.3
886,885 + BBR_RS13850 0.70 -1.3
886,890 + BBR_RS13850 0.71 +1.0
886,954 - BBR_RS13850 0.81 -0.3
887,066 - -1.4
887,069 + +0.3
887,166 + -2.0
887,173 + +0.6
887,278 + BBR_RS13855 0.15 +0.1
887,312 - BBR_RS13855 0.17 -0.8
887,312 - BBR_RS13855 0.17 +1.2
887,336 - BBR_RS13855 0.18 -0.2
887,379 + BBR_RS13855 0.21 -1.1
887,474 + BBR_RS13855 0.28 +2.3
887,545 + BBR_RS13855 0.33 -0.9
887,646 - BBR_RS13855 0.40 -0.3
887,690 - BBR_RS13855 0.42 -0.3
887,767 - BBR_RS13855 0.48 +0.7
887,856 + BBR_RS13855 0.54 +0.8
887,899 + BBR_RS13855 0.57 +1.4
887,907 - BBR_RS13855 0.57 -0.6
887,911 + BBR_RS13855 0.58 +0.0
887,972 - BBR_RS13855 0.62 +0.3
887,973 + BBR_RS13855 0.62 +0.4
887,975 + BBR_RS13855 0.62 +0.3
887,975 + BBR_RS13855 0.62 +0.1
888,008 + BBR_RS13855 0.64 -1.3
888,023 + BBR_RS13855 0.65 +1.0

Or see this region's nucleotide sequence