Experiment: RCH2_defined_glucose_5mM with Salicylic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000803 and ABIE53_000804 are separated by 34 nucleotides ABIE53_000804 and ABIE53_000805 are separated by 44 nucleotides ABIE53_000805 and ABIE53_000806 are separated by 40 nucleotides ABIE53_000806 and ABIE53_000807 are separated by 10 nucleotides
ABIE53_000803: ABIE53_000803 - lactoylglutathione lyase, at 871,995 to 872,381
_000803
ABIE53_000804: ABIE53_000804 - putative metal-dependent hydrolase, at 872,416 to 873,285
_000804
ABIE53_000805: ABIE53_000805 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 873,330 to 874,088
_000805
ABIE53_000806: ABIE53_000806 - D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase, at 874,129 to 874,683
_000806
ABIE53_000807: ABIE53_000807 - glycyl-tRNA synthetase beta chain, at 874,694 to 876,796
_000807
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 872.349 kb on + strand at 872.350 kb on - strand at 872.350 kb on - strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.379 kb on + strand at 872.380 kb on - strand at 872.380 kb on - strand at 872.380 kb on - strand at 872.380 kb on - strand at 872.398 kb on + strand at 872.398 kb on + strand at 872.399 kb on - strand at 872.399 kb on - strand at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.543 kb on + strand, within ABIE53_000804 at 872.544 kb on - strand, within ABIE53_000804 at 872.544 kb on - strand, within ABIE53_000804 at 872.551 kb on - strand, within ABIE53_000804 at 872.645 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.654 kb on + strand, within ABIE53_000804 at 872.655 kb on - strand, within ABIE53_000804 at 872.655 kb on - strand, within ABIE53_000804 at 872.679 kb on - strand, within ABIE53_000804 at 872.679 kb on - strand, within ABIE53_000804 at 873.077 kb on + strand, within ABIE53_000804 at 873.078 kb on - strand, within ABIE53_000804 at 873.171 kb on + strand, within ABIE53_000804 at 873.171 kb on + strand, within ABIE53_000804 at 873.171 kb on + strand, within ABIE53_000804 at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.271 kb on - strand at 873.306 kb on + strand at 873.306 kb on + strand at 873.306 kb on + strand at 873.307 kb on - strand at 873.307 kb on - strand at 873.497 kb on - strand, within ABIE53_000805 at 873.776 kb on - strand, within ABIE53_000805 at 873.799 kb on + strand, within ABIE53_000805 at 873.799 kb on + strand, within ABIE53_000805 at 873.799 kb on + strand, within ABIE53_000805 at 873.800 kb on - strand, within ABIE53_000805 at 873.914 kb on - strand, within ABIE53_000805 at 874.044 kb on + strand at 874.055 kb on - strand at 874.055 kb on - strand at 874.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Salicylic 5 mM remove 872,349 + +0.7 872,350 - -0.2 872,350 - +0.6 872,379 + -0.5 872,379 + -0.0 872,379 + -0.8 872,379 + +0.0 872,379 + +0.6 872,379 + +0.0 872,380 - -1.3 872,380 - +0.4 872,380 - +2.7 872,380 - +0.1 872,398 + -2.6 872,398 + +1.6 872,399 - -0.5 872,399 - -0.7 872,543 + ABIE53_000804 0.15 -0.5 872,543 + ABIE53_000804 0.15 -0.3 872,543 + ABIE53_000804 0.15 -0.1 872,543 + ABIE53_000804 0.15 +0.7 872,543 + ABIE53_000804 0.15 -0.4 872,543 + ABIE53_000804 0.15 -2.3 872,544 - ABIE53_000804 0.15 -0.1 872,544 - ABIE53_000804 0.15 -0.8 872,551 - ABIE53_000804 0.16 -0.6 872,645 + ABIE53_000804 0.26 +0.4 872,654 + ABIE53_000804 0.27 -1.3 872,654 + ABIE53_000804 0.27 +1.2 872,654 + ABIE53_000804 0.27 -1.3 872,654 + ABIE53_000804 0.27 +0.6 872,655 - ABIE53_000804 0.27 -0.8 872,655 - ABIE53_000804 0.27 -1.7 872,679 - ABIE53_000804 0.30 -1.6 872,679 - ABIE53_000804 0.30 -1.2 873,077 + ABIE53_000804 0.76 -0.6 873,078 - ABIE53_000804 0.76 +3.1 873,171 + ABIE53_000804 0.87 +1.7 873,171 + ABIE53_000804 0.87 +1.7 873,171 + ABIE53_000804 0.87 +0.4 873,271 - -0.0 873,271 - +2.3 873,271 - -2.2 873,271 - -0.1 873,306 + -0.1 873,306 + +0.0 873,306 + -1.1 873,307 - +1.4 873,307 - -1.7 873,497 - ABIE53_000805 0.22 -0.8 873,776 - ABIE53_000805 0.59 -0.1 873,799 + ABIE53_000805 0.62 -2.3 873,799 + ABIE53_000805 0.62 -2.0 873,799 + ABIE53_000805 0.62 -0.3 873,800 - ABIE53_000805 0.62 -1.8 873,914 - ABIE53_000805 0.77 -1.6 874,044 + -0.8 874,055 - -1.8 874,055 - -0.8 874,055 - +0.9
Or see this region's nucleotide sequence