Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04110 and HSERO_RS04115 are separated by 285 nucleotides HSERO_RS04115 and HSERO_RS04120 are separated by 284 nucleotides HSERO_RS04120 and HSERO_RS04125 are separated by 574 nucleotides
HSERO_RS04110: HSERO_RS04110 - hypothetical protein, at 899,028 to 901,610
_RS04110
HSERO_RS04115: HSERO_RS04115 - hypothetical protein, at 901,896 to 902,135
_RS04115
HSERO_RS04120: HSERO_RS04120 - hypothetical protein, at 902,420 to 902,965
_RS04120
HSERO_RS04125: HSERO_RS04125 - LysR family transcriptional regulator, at 903,540 to 904,469
_RS04125
Position (kb) 902
903 Strain fitness (log2 ratio) -2
-1
0
1 at 901.469 kb on - strand at 901.469 kb on - strand at 902.230 kb on + strand at 902.372 kb on + strand at 902.576 kb on + strand, within HSERO_RS04120 at 902.665 kb on - strand, within HSERO_RS04120 at 902.883 kb on + strand, within HSERO_RS04120 at 903.228 kb on - strand at 903.243 kb on - strand at 903.256 kb on + strand at 903.277 kb on + strand at 903.319 kb on + strand at 903.350 kb on - strand at 903.403 kb on - strand at 903.494 kb on - strand at 903.525 kb on - strand at 903.626 kb on - strand at 903.691 kb on - strand, within HSERO_RS04125 at 903.702 kb on + strand, within HSERO_RS04125 at 903.709 kb on - strand, within HSERO_RS04125 at 903.709 kb on - strand, within HSERO_RS04125 at 903.773 kb on - strand, within HSERO_RS04125 at 903.847 kb on - strand, within HSERO_RS04125
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 901,469 - +0.5 901,469 - +1.2 902,230 + +1.2 902,372 + +0.9 902,576 + HSERO_RS04120 0.29 -1.6 902,665 - HSERO_RS04120 0.45 -0.5 902,883 + HSERO_RS04120 0.85 -0.5 903,228 - -0.1 903,243 - +0.5 903,256 + +0.9 903,277 + -0.6 903,319 + -1.0 903,350 - +0.3 903,403 - -0.5 903,494 - -0.5 903,525 - -1.4 903,626 - +0.2 903,691 - HSERO_RS04125 0.16 -0.1 903,702 + HSERO_RS04125 0.17 -1.9 903,709 - HSERO_RS04125 0.18 +0.4 903,709 - HSERO_RS04125 0.18 -1.2 903,773 - HSERO_RS04125 0.25 +0.2 903,847 - HSERO_RS04125 0.33 -1.4
Or see this region's nucleotide sequence