Experiment: MoYLS4 with Perchlorate 6.25mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0398 and DVU0399 overlap by 4 nucleotides DVU0399 and DVU0400 are separated by 84 nucleotides DVU0400 and DVU0401 are separated by 17 nucleotides DVU0401 and dsrA are separated by 471 nucleotides
DVU0398: DVU0398 - HMGL-like domain protein (TIGR), at 445,885 to 447,711
DVU0398
DVU0399: DVU0399 - hypothetical protein (TIGR), at 447,708 to 448,496
DVU0399
DVU0400: DVU0400 - hypothetical protein (TIGR), at 448,581 to 449,132
DVU0400
DVU0401: DVU0401 - hypothetical protein (TIGR), at 449,150 to 449,416
DVU0401
DVU0402: dsrA - dissimilatory sulfite reductase alpha subunit (TIGR), at 449,888 to 451,201
dsrA
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 447.726 kb on + strand at 447.734 kb on - strand at 447.768 kb on - strand at 447.770 kb on + strand at 447.847 kb on + strand, within DVU0399 at 447.847 kb on + strand, within DVU0399 at 447.910 kb on + strand, within DVU0399 at 447.948 kb on + strand, within DVU0399 at 447.956 kb on - strand, within DVU0399 at 447.978 kb on + strand, within DVU0399 at 448.131 kb on + strand, within DVU0399 at 448.157 kb on - strand, within DVU0399 at 448.167 kb on - strand, within DVU0399 at 448.172 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.182 kb on - strand, within DVU0399 at 448.272 kb on - strand, within DVU0399 at 448.306 kb on + strand, within DVU0399 at 448.352 kb on + strand, within DVU0399 at 448.359 kb on + strand, within DVU0399 at 448.360 kb on - strand, within DVU0399 at 448.420 kb on + strand at 448.476 kb on - strand at 448.486 kb on - strand at 448.542 kb on + strand at 448.577 kb on - strand at 448.682 kb on + strand, within DVU0400 at 448.696 kb on + strand, within DVU0400 at 448.719 kb on - strand, within DVU0400 at 448.735 kb on + strand, within DVU0400 at 448.773 kb on + strand, within DVU0400 at 448.773 kb on + strand, within DVU0400 at 448.781 kb on - strand, within DVU0400 at 448.793 kb on + strand, within DVU0400 at 448.801 kb on - strand, within DVU0400 at 448.828 kb on + strand, within DVU0400 at 448.846 kb on - strand, within DVU0400 at 448.875 kb on - strand, within DVU0400 at 448.906 kb on - strand, within DVU0400 at 449.013 kb on + strand, within DVU0400 at 449.027 kb on - strand, within DVU0400 at 449.139 kb on + strand at 449.166 kb on + strand at 449.174 kb on - strand at 449.174 kb on - strand at 449.198 kb on - strand, within DVU0401 at 449.212 kb on + strand, within DVU0401 at 449.324 kb on + strand, within DVU0401 at 449.361 kb on - strand, within DVU0401 at 449.385 kb on + strand, within DVU0401 at 449.393 kb on - strand at 449.465 kb on - strand at 449.484 kb on + strand at 449.494 kb on + strand at 449.513 kb on + strand at 449.513 kb on + strand at 449.513 kb on + strand at 449.519 kb on - strand at 449.526 kb on - strand at 449.561 kb on + strand at 449.654 kb on - strand at 449.685 kb on - strand at 449.770 kb on - strand at 449.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Perchlorate 6.25mM remove 447,726 + +1.7 447,734 - -0.5 447,768 - +1.5 447,770 + -0.4 447,847 + DVU0399 0.18 -0.1 447,847 + DVU0399 0.18 -0.9 447,910 + DVU0399 0.26 +0.2 447,948 + DVU0399 0.30 -0.2 447,956 - DVU0399 0.31 -0.2 447,978 + DVU0399 0.34 -0.6 448,131 + DVU0399 0.54 -0.7 448,157 - DVU0399 0.57 -0.4 448,167 - DVU0399 0.58 -0.0 448,172 - DVU0399 0.59 +1.4 448,182 - DVU0399 0.60 +2.6 448,182 - DVU0399 0.60 +0.2 448,272 - DVU0399 0.71 +0.1 448,306 + DVU0399 0.76 +0.7 448,352 + DVU0399 0.82 -0.0 448,359 + DVU0399 0.83 +0.6 448,360 - DVU0399 0.83 +0.3 448,420 + +0.8 448,476 - -1.0 448,486 - -0.5 448,542 + -1.1 448,577 - +0.3 448,682 + DVU0400 0.18 -0.1 448,696 + DVU0400 0.21 -1.3 448,719 - DVU0400 0.25 -2.4 448,735 + DVU0400 0.28 -0.1 448,773 + DVU0400 0.35 -0.5 448,773 + DVU0400 0.35 +3.8 448,781 - DVU0400 0.36 -0.2 448,793 + DVU0400 0.38 -0.5 448,801 - DVU0400 0.40 -1.5 448,828 + DVU0400 0.45 +0.6 448,846 - DVU0400 0.48 -0.4 448,875 - DVU0400 0.53 -0.1 448,906 - DVU0400 0.59 -2.5 449,013 + DVU0400 0.78 -0.6 449,027 - DVU0400 0.81 -0.6 449,139 + -0.3 449,166 + +0.1 449,174 - -0.2 449,174 - -1.0 449,198 - DVU0401 0.18 +1.2 449,212 + DVU0401 0.23 -0.3 449,324 + DVU0401 0.65 +0.2 449,361 - DVU0401 0.79 -0.5 449,385 + DVU0401 0.88 -0.9 449,393 - +0.9 449,465 - +0.1 449,484 + +0.3 449,494 + -0.3 449,513 + -0.6 449,513 + +1.6 449,513 + -1.2 449,519 - -0.6 449,526 - -0.1 449,561 + -0.4 449,654 - -0.3 449,685 - -0.4 449,770 - -0.8 449,864 - +2.2
Or see this region's nucleotide sequence