Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004034 and ABIE53_004035 are separated by 22 nucleotides ABIE53_004035 and ABIE53_004036 overlap by 35 nucleotides ABIE53_004036 and ABIE53_004037 are separated by 3 nucleotides ABIE53_004037 and ABIE53_004038 are separated by 163 nucleotides ABIE53_004038 and ABIE53_004039 are separated by 133 nucleotides
ABIE53_004034: ABIE53_004034 - hypothetical protein, at 191,155 to 191,577
_004034
ABIE53_004035: ABIE53_004035 - putative O-methyltransferase YrrM, at 191,600 to 192,097
_004035
ABIE53_004036: ABIE53_004036 - putative O-methyltransferase YrrM, at 192,063 to 192,269
_004036
ABIE53_004037: ABIE53_004037 - tetratricopeptide (TPR) repeat protein, at 192,273 to 194,471
_004037
ABIE53_004038: ABIE53_004038 - hypothetical protein, at 194,635 to 195,036
_004038
ABIE53_004039: ABIE53_004039 - iron complex outermembrane receptor protein, at 195,170 to 197,470
_004039
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 191.359 kb on + strand, within ABIE53_004034 at 191.360 kb on - strand, within ABIE53_004034 at 191.361 kb on + strand, within ABIE53_004034 at 191.362 kb on - strand, within ABIE53_004034 at 191.499 kb on + strand, within ABIE53_004034 at 191.575 kb on + strand at 191.576 kb on - strand at 191.576 kb on - strand at 191.620 kb on + strand at 191.633 kb on + strand at 191.808 kb on - strand, within ABIE53_004035 at 191.879 kb on + strand, within ABIE53_004035 at 191.880 kb on - strand, within ABIE53_004035 at 192.403 kb on + strand at 192.403 kb on + strand at 192.403 kb on + strand at 192.404 kb on - strand at 192.404 kb on - strand at 192.704 kb on + strand, within ABIE53_004037 at 192.704 kb on + strand, within ABIE53_004037 at 192.705 kb on - strand, within ABIE53_004037 at 192.705 kb on - strand, within ABIE53_004037 at 192.989 kb on + strand, within ABIE53_004037 at 192.990 kb on - strand, within ABIE53_004037 at 193.174 kb on + strand, within ABIE53_004037 at 193.174 kb on + strand, within ABIE53_004037 at 193.246 kb on + strand, within ABIE53_004037 at 193.276 kb on + strand, within ABIE53_004037 at 193.333 kb on + strand, within ABIE53_004037 at 193.333 kb on + strand, within ABIE53_004037 at 193.334 kb on - strand, within ABIE53_004037 at 193.334 kb on - strand, within ABIE53_004037 at 193.449 kb on + strand, within ABIE53_004037 at 193.537 kb on + strand, within ABIE53_004037 at 193.538 kb on - strand, within ABIE53_004037 at 193.655 kb on - strand, within ABIE53_004037 at 193.739 kb on + strand, within ABIE53_004037 at 193.945 kb on + strand, within ABIE53_004037 at 193.946 kb on - strand, within ABIE53_004037 at 193.946 kb on - strand, within ABIE53_004037 at 194.152 kb on + strand, within ABIE53_004037 at 194.152 kb on + strand, within ABIE53_004037 at 194.360 kb on - strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.504 kb on + strand at 194.524 kb on + strand at 194.566 kb on + strand at 194.763 kb on - strand, within ABIE53_004038 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.411 kb on - strand, within ABIE53_004039
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Pyridoxal 1 mM remove 191,359 + ABIE53_004034 0.48 -1.4 191,360 - ABIE53_004034 0.48 -0.9 191,361 + ABIE53_004034 0.49 -1.6 191,362 - ABIE53_004034 0.49 -1.0 191,499 + ABIE53_004034 0.81 -0.2 191,575 + -0.4 191,576 - +0.5 191,576 - +0.7 191,620 + -2.0 191,633 + -0.4 191,808 - ABIE53_004035 0.42 +0.3 191,879 + ABIE53_004035 0.56 +2.7 191,880 - ABIE53_004035 0.56 -0.9 192,403 + +0.7 192,403 + -0.6 192,403 + -0.4 192,404 - -0.9 192,404 - +0.0 192,704 + ABIE53_004037 0.20 -0.4 192,704 + ABIE53_004037 0.20 -1.3 192,705 - ABIE53_004037 0.20 -1.2 192,705 - ABIE53_004037 0.20 +0.1 192,989 + ABIE53_004037 0.33 +0.2 192,990 - ABIE53_004037 0.33 +0.1 193,174 + ABIE53_004037 0.41 -1.3 193,174 + ABIE53_004037 0.41 -1.2 193,246 + ABIE53_004037 0.44 +2.6 193,276 + ABIE53_004037 0.46 -0.2 193,333 + ABIE53_004037 0.48 -3.5 193,333 + ABIE53_004037 0.48 +0.7 193,334 - ABIE53_004037 0.48 -1.1 193,334 - ABIE53_004037 0.48 -1.9 193,449 + ABIE53_004037 0.53 -0.8 193,537 + ABIE53_004037 0.57 -1.6 193,538 - ABIE53_004037 0.58 +3.1 193,655 - ABIE53_004037 0.63 -0.5 193,739 + ABIE53_004037 0.67 +0.4 193,945 + ABIE53_004037 0.76 -0.4 193,946 - ABIE53_004037 0.76 -0.3 193,946 - ABIE53_004037 0.76 -1.2 194,152 + ABIE53_004037 0.85 +1.1 194,152 + ABIE53_004037 0.85 +0.6 194,360 - +0.3 194,492 + -0.7 194,492 + -1.0 194,492 + -1.0 194,492 + +2.1 194,492 + -0.2 194,492 + -2.3 194,492 + +0.7 194,492 + -0.4 194,493 - +0.9 194,493 - -0.2 194,493 - -0.7 194,493 - -0.2 194,493 - +0.9 194,493 - +2.1 194,504 + -1.2 194,524 + -0.8 194,566 + -0.8 194,763 - ABIE53_004038 0.32 -0.9 195,410 + ABIE53_004039 0.10 -0.7 195,410 + ABIE53_004039 0.10 -0.5 195,410 + ABIE53_004039 0.10 +0.1 195,410 + ABIE53_004039 0.10 +1.5 195,410 + ABIE53_004039 0.10 -0.2 195,411 - ABIE53_004039 0.10 -0.2
Or see this region's nucleotide sequence