Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001743

Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_001742 and ABIE53_001743 are separated by 28 nucleotidesABIE53_001743 and ABIE53_001744 are separated by 101 nucleotides ABIE53_001742: ABIE53_001742 - starch synthase, at 1,965,719 to 1,966,969 _001742 ABIE53_001743: ABIE53_001743 - hypothetical protein, at 1,966,998 to 1,967,165 _001743 ABIE53_001744: ABIE53_001744 - glucose-1-phosphate adenylyltransferase, at 1,967,267 to 1,968,532 _001744 Position (kb) 1966 1967 1968Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1966.359 kb on + strand, within ABIE53_001742at 1966.360 kb on - strand, within ABIE53_001742at 1966.360 kb on - strand, within ABIE53_001742at 1966.402 kb on + strand, within ABIE53_001742at 1966.402 kb on + strand, within ABIE53_001742at 1966.402 kb on + strand, within ABIE53_001742at 1966.403 kb on - strand, within ABIE53_001742at 1966.403 kb on - strand, within ABIE53_001742at 1966.405 kb on - strand, within ABIE53_001742at 1966.504 kb on - strand, within ABIE53_001742at 1966.536 kb on + strand, within ABIE53_001742at 1966.536 kb on + strand, within ABIE53_001742at 1966.536 kb on + strand, within ABIE53_001742at 1966.536 kb on + strand, within ABIE53_001742at 1966.537 kb on - strand, within ABIE53_001742at 1966.537 kb on - strand, within ABIE53_001742at 1966.537 kb on - strand, within ABIE53_001742at 1966.537 kb on - strand, within ABIE53_001742at 1966.540 kb on - strand, within ABIE53_001742at 1966.540 kb on - strand, within ABIE53_001742at 1966.571 kb on + strand, within ABIE53_001742at 1966.572 kb on + strand, within ABIE53_001742at 1966.572 kb on + strand, within ABIE53_001742at 1966.573 kb on - strand, within ABIE53_001742at 1966.573 kb on - strand, within ABIE53_001742at 1966.573 kb on - strand, within ABIE53_001742at 1966.643 kb on + strand, within ABIE53_001742at 1966.643 kb on + strand, within ABIE53_001742at 1966.643 kb on + strand, within ABIE53_001742at 1966.644 kb on - strand, within ABIE53_001742at 1966.653 kb on + strand, within ABIE53_001742at 1966.726 kb on - strand, within ABIE53_001742at 1966.859 kb on + strandat 1966.859 kb on + strandat 1966.859 kb on + strandat 1966.860 kb on - strandat 1966.860 kb on - strandat 1966.860 kb on - strandat 1966.878 kb on + strandat 1966.879 kb on - strandat 1966.899 kb on + strandat 1966.900 kb on - strandat 1966.923 kb on + strandat 1966.923 kb on + strandat 1966.923 kb on + strandat 1966.923 kb on + strandat 1966.924 kb on - strandat 1966.924 kb on - strandat 1966.924 kb on - strandat 1967.144 kb on - strand, within ABIE53_001743at 1967.144 kb on - strand, within ABIE53_001743at 1967.164 kb on - strandat 1967.200 kb on + strandat 1967.200 kb on + strandat 1967.201 kb on - strandat 1967.201 kb on - strandat 1967.201 kb on - strandat 1967.201 kb on - strandat 1967.268 kb on + strandat 1967.268 kb on + strandat 1967.268 kb on + strandat 1967.269 kb on - strandat 1967.269 kb on - strandat 1967.269 kb on - strandat 1967.269 kb on - strandat 1967.269 kb on - strandat 1967.269 kb on - strandat 1967.269 kb on - strandat 1967.324 kb on - strandat 1967.328 kb on + strandat 1967.328 kb on + strandat 1967.328 kb on + strandat 1967.328 kb on + strandat 1967.467 kb on + strand, within ABIE53_001744at 1967.467 kb on + strand, within ABIE53_001744at 1967.467 kb on + strand, within ABIE53_001744at 1967.467 kb on + strand, within ABIE53_001744at 1967.468 kb on - strand, within ABIE53_001744at 1967.468 kb on - strand, within ABIE53_001744at 1967.468 kb on - strand, within ABIE53_001744at 1967.468 kb on - strand, within ABIE53_001744at 1967.471 kb on - strand, within ABIE53_001744at 1967.471 kb on - strand, within ABIE53_001744at 1967.471 kb on - strand, within ABIE53_001744at 1967.625 kb on + strand, within ABIE53_001744at 1967.626 kb on - strand, within ABIE53_001744at 1967.652 kb on + strand, within ABIE53_001744at 1967.653 kb on - strand, within ABIE53_001744at 1967.653 kb on - strand, within ABIE53_001744at 1967.653 kb on - strand, within ABIE53_001744at 1967.653 kb on - strand, within ABIE53_001744at 1967.653 kb on - strand, within ABIE53_001744at 1967.704 kb on - strand, within ABIE53_001744at 1967.733 kb on + strand, within ABIE53_001744at 1967.734 kb on - strand, within ABIE53_001744at 1967.880 kb on + strand, within ABIE53_001744at 1967.881 kb on - strand, within ABIE53_001744at 1967.886 kb on + strand, within ABIE53_001744at 1967.886 kb on + strand, within ABIE53_001744at 1967.887 kb on - strand, within ABIE53_001744at 1967.887 kb on - strand, within ABIE53_001744at 1967.904 kb on + strand, within ABIE53_001744at 1967.904 kb on + strand, within ABIE53_001744at 1967.904 kb on + strand, within ABIE53_001744at 1967.904 kb on + strand, within ABIE53_001744at 1967.904 kb on + strand, within ABIE53_001744at 1967.904 kb on + strand, within ABIE53_001744at 1967.904 kb on + strand, within ABIE53_001744at 1967.905 kb on - strand, within ABIE53_001744at 1967.905 kb on - strand, within ABIE53_001744at 1967.905 kb on - strand, within ABIE53_001744at 1967.905 kb on - strand, within ABIE53_001744at 1968.097 kb on + strand, within ABIE53_001744at 1968.097 kb on + strand, within ABIE53_001744at 1968.098 kb on - strand, within ABIE53_001744at 1968.098 kb on - strand, within ABIE53_001744at 1968.105 kb on + strand, within ABIE53_001744at 1968.105 kb on + strand, within ABIE53_001744at 1968.106 kb on - strand, within ABIE53_001744at 1968.118 kb on - strand, within ABIE53_001744at 1968.118 kb on - strand, within ABIE53_001744at 1968.118 kb on - strand, within ABIE53_001744at 1968.118 kb on - strand, within ABIE53_001744at 1968.118 kb on - strand, within ABIE53_001744at 1968.118 kb on - strand, within ABIE53_001744at 1968.118 kb on - strand, within ABIE53_001744at 1968.147 kb on + strand, within ABIE53_001744at 1968.147 kb on + strand, within ABIE53_001744at 1968.147 kb on + strand, within ABIE53_001744at 1968.148 kb on - strand, within ABIE53_001744at 1968.148 kb on - strand, within ABIE53_001744at 1968.148 kb on - strand, within ABIE53_001744at 1968.148 kb on - strand, within ABIE53_001744at 1968.148 kb on - strand, within ABIE53_001744at 1968.148 kb on - strand, within ABIE53_001744

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Pyridoxal 1 mM
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1,966,359 + ABIE53_001742 0.51 +0.7
1,966,360 - ABIE53_001742 0.51 -0.9
1,966,360 - ABIE53_001742 0.51 -1.0
1,966,402 + ABIE53_001742 0.55 +0.1
1,966,402 + ABIE53_001742 0.55 +0.4
1,966,402 + ABIE53_001742 0.55 +0.2
1,966,403 - ABIE53_001742 0.55 +1.1
1,966,403 - ABIE53_001742 0.55 -0.1
1,966,405 - ABIE53_001742 0.55 +0.6
1,966,504 - ABIE53_001742 0.63 +2.7
1,966,536 + ABIE53_001742 0.65 -0.4
1,966,536 + ABIE53_001742 0.65 -0.4
1,966,536 + ABIE53_001742 0.65 -0.1
1,966,536 + ABIE53_001742 0.65 +0.1
1,966,537 - ABIE53_001742 0.65 -0.4
1,966,537 - ABIE53_001742 0.65 -1.4
1,966,537 - ABIE53_001742 0.65 -1.2
1,966,537 - ABIE53_001742 0.65 +0.9
1,966,540 - ABIE53_001742 0.66 -0.8
1,966,540 - ABIE53_001742 0.66 -0.7
1,966,571 + ABIE53_001742 0.68 +2.7
1,966,572 + ABIE53_001742 0.68 +0.6
1,966,572 + ABIE53_001742 0.68 +1.0
1,966,573 - ABIE53_001742 0.68 +1.0
1,966,573 - ABIE53_001742 0.68 -1.3
1,966,573 - ABIE53_001742 0.68 -1.4
1,966,643 + ABIE53_001742 0.74 -0.4
1,966,643 + ABIE53_001742 0.74 -0.3
1,966,643 + ABIE53_001742 0.74 +1.2
1,966,644 - ABIE53_001742 0.74 -0.2
1,966,653 + ABIE53_001742 0.75 -0.4
1,966,726 - ABIE53_001742 0.80 +2.1
1,966,859 + -0.8
1,966,859 + -0.9
1,966,859 + +0.1
1,966,860 - +0.4
1,966,860 - -0.9
1,966,860 - -0.3
1,966,878 + -2.0
1,966,879 - +0.6
1,966,899 + -0.0
1,966,900 - +1.1
1,966,923 + +0.2
1,966,923 + +0.1
1,966,923 + +1.4
1,966,923 + -0.9
1,966,924 - -0.4
1,966,924 - -0.1
1,966,924 - -0.6
1,967,144 - ABIE53_001743 0.87 +0.2
1,967,144 - ABIE53_001743 0.87 +2.4
1,967,164 - -1.6
1,967,200 + +1.1
1,967,200 + -1.8
1,967,201 - -1.3
1,967,201 - +0.3
1,967,201 - +0.9
1,967,201 - -0.4
1,967,268 + -0.2
1,967,268 + +0.9
1,967,268 + -1.0
1,967,269 - +0.4
1,967,269 - +0.2
1,967,269 - +0.0
1,967,269 - -1.4
1,967,269 - -0.5
1,967,269 - +1.1
1,967,269 - -0.0
1,967,324 - -1.7
1,967,328 + +0.8
1,967,328 + -0.2
1,967,328 + +0.4
1,967,328 + -2.2
1,967,467 + ABIE53_001744 0.16 -0.4
1,967,467 + ABIE53_001744 0.16 +0.4
1,967,467 + ABIE53_001744 0.16 -1.2
1,967,467 + ABIE53_001744 0.16 -0.4
1,967,468 - ABIE53_001744 0.16 +0.4
1,967,468 - ABIE53_001744 0.16 +1.5
1,967,468 - ABIE53_001744 0.16 -0.5
1,967,468 - ABIE53_001744 0.16 +0.1
1,967,471 - ABIE53_001744 0.16 +0.0
1,967,471 - ABIE53_001744 0.16 +0.6
1,967,471 - ABIE53_001744 0.16 +0.8
1,967,625 + ABIE53_001744 0.28 +0.1
1,967,626 - ABIE53_001744 0.28 +0.2
1,967,652 + ABIE53_001744 0.30 -1.1
1,967,653 - ABIE53_001744 0.30 -0.4
1,967,653 - ABIE53_001744 0.30 +0.6
1,967,653 - ABIE53_001744 0.30 -0.1
1,967,653 - ABIE53_001744 0.30 -0.0
1,967,653 - ABIE53_001744 0.30 -0.4
1,967,704 - ABIE53_001744 0.35 +1.0
1,967,733 + ABIE53_001744 0.37 +1.1
1,967,734 - ABIE53_001744 0.37 +3.1
1,967,880 + ABIE53_001744 0.48 +0.2
1,967,881 - ABIE53_001744 0.48 +0.6
1,967,886 + ABIE53_001744 0.49 +1.3
1,967,886 + ABIE53_001744 0.49 +0.4
1,967,887 - ABIE53_001744 0.49 +2.1
1,967,887 - ABIE53_001744 0.49 +0.9
1,967,904 + ABIE53_001744 0.50 -0.4
1,967,904 + ABIE53_001744 0.50 +0.3
1,967,904 + ABIE53_001744 0.50 +0.1
1,967,904 + ABIE53_001744 0.50 +2.7
1,967,904 + ABIE53_001744 0.50 -1.2
1,967,904 + ABIE53_001744 0.50 +2.1
1,967,904 + ABIE53_001744 0.50 -0.3
1,967,905 - ABIE53_001744 0.50 -0.3
1,967,905 - ABIE53_001744 0.50 +2.0
1,967,905 - ABIE53_001744 0.50 +3.0
1,967,905 - ABIE53_001744 0.50 -1.9
1,968,097 + ABIE53_001744 0.66 -2.9
1,968,097 + ABIE53_001744 0.66 +0.4
1,968,098 - ABIE53_001744 0.66 +0.7
1,968,098 - ABIE53_001744 0.66 +0.7
1,968,105 + ABIE53_001744 0.66 +1.6
1,968,105 + ABIE53_001744 0.66 -1.0
1,968,106 - ABIE53_001744 0.66 +0.2
1,968,118 - ABIE53_001744 0.67 -0.7
1,968,118 - ABIE53_001744 0.67 -0.9
1,968,118 - ABIE53_001744 0.67 -2.3
1,968,118 - ABIE53_001744 0.67 +1.6
1,968,118 - ABIE53_001744 0.67 -0.5
1,968,118 - ABIE53_001744 0.67 -0.3
1,968,118 - ABIE53_001744 0.67 -0.6
1,968,147 + ABIE53_001744 0.70 -0.7
1,968,147 + ABIE53_001744 0.70 -2.4
1,968,147 + ABIE53_001744 0.70 +1.2
1,968,148 - ABIE53_001744 0.70 -0.5
1,968,148 - ABIE53_001744 0.70 +0.1
1,968,148 - ABIE53_001744 0.70 -1.0
1,968,148 - ABIE53_001744 0.70 -1.2
1,968,148 - ABIE53_001744 0.70 -0.2
1,968,148 - ABIE53_001744 0.70 -0.3

Or see this region's nucleotide sequence