Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001550

Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_001548 and ABIE53_001549 are separated by 111 nucleotidesABIE53_001549 and ABIE53_001550 are separated by 88 nucleotidesABIE53_001550 and ABIE53_001551 are separated by 186 nucleotidesABIE53_001551 and ABIE53_001552 overlap by 4 nucleotidesABIE53_001552 and ABIE53_001553 overlap by 4 nucleotides ABIE53_001548: ABIE53_001548 - 3-oxoacyl-[acyl-carrier protein] reductase, at 1,725,345 to 1,726,124 _001548 ABIE53_001549: ABIE53_001549 - methylglyoxal synthase, at 1,726,236 to 1,726,625 _001549 ABIE53_001550: ABIE53_001550 - NADPH2:quinone reductase, at 1,726,714 to 1,727,688 _001550 ABIE53_001551: ABIE53_001551 - hypothetical protein, at 1,727,875 to 1,727,985 _001551 ABIE53_001552: ABIE53_001552 - K+-transporting ATPase KdpF subunit, at 1,727,982 to 1,728,074 _001552 ABIE53_001553: ABIE53_001553 - K+-transporting ATPase ATPase A chain, at 1,728,071 to 1,729,876 _001553 Position (kb) 1726 1727 1728Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1726.069 kb on - strandat 1726.069 kb on - strandat 1726.123 kb on - strandat 1726.230 kb on + strandat 1726.230 kb on + strandat 1726.231 kb on - strandat 1726.231 kb on - strandat 1726.231 kb on - strandat 1726.305 kb on + strand, within ABIE53_001549at 1726.305 kb on + strand, within ABIE53_001549at 1726.305 kb on + strand, within ABIE53_001549at 1726.305 kb on + strand, within ABIE53_001549at 1726.305 kb on + strand, within ABIE53_001549at 1726.305 kb on + strand, within ABIE53_001549at 1726.607 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.682 kb on + strandat 1726.683 kb on - strandat 1726.683 kb on - strandat 1726.683 kb on - strandat 1726.683 kb on - strandat 1726.683 kb on - strandat 1726.683 kb on - strandat 1726.683 kb on - strandat 1726.683 kb on - strandat 1726.686 kb on + strandat 1726.837 kb on + strand, within ABIE53_001550at 1726.837 kb on + strand, within ABIE53_001550at 1726.837 kb on + strand, within ABIE53_001550at 1726.837 kb on + strand, within ABIE53_001550at 1726.837 kb on + strand, within ABIE53_001550at 1726.837 kb on + strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.838 kb on - strand, within ABIE53_001550at 1726.840 kb on - strand, within ABIE53_001550at 1726.849 kb on + strand, within ABIE53_001550at 1726.849 kb on + strand, within ABIE53_001550at 1726.850 kb on - strand, within ABIE53_001550at 1726.850 kb on - strand, within ABIE53_001550at 1726.850 kb on - strand, within ABIE53_001550at 1726.850 kb on - strand, within ABIE53_001550at 1726.850 kb on - strand, within ABIE53_001550at 1726.867 kb on + strand, within ABIE53_001550at 1726.970 kb on - strand, within ABIE53_001550at 1726.970 kb on - strand, within ABIE53_001550at 1726.970 kb on - strand, within ABIE53_001550at 1726.993 kb on + strand, within ABIE53_001550at 1726.993 kb on + strand, within ABIE53_001550at 1726.994 kb on - strand, within ABIE53_001550at 1726.994 kb on - strand, within ABIE53_001550at 1727.099 kb on - strand, within ABIE53_001550at 1727.099 kb on - strand, within ABIE53_001550at 1727.117 kb on - strand, within ABIE53_001550at 1727.117 kb on - strand, within ABIE53_001550at 1727.284 kb on + strand, within ABIE53_001550at 1727.284 kb on + strand, within ABIE53_001550at 1727.284 kb on + strand, within ABIE53_001550at 1727.284 kb on + strand, within ABIE53_001550at 1727.285 kb on - strand, within ABIE53_001550at 1727.287 kb on - strand, within ABIE53_001550at 1727.287 kb on - strand, within ABIE53_001550at 1727.350 kb on + strand, within ABIE53_001550at 1727.350 kb on + strand, within ABIE53_001550at 1727.350 kb on + strand, within ABIE53_001550at 1727.350 kb on + strand, within ABIE53_001550at 1727.351 kb on - strand, within ABIE53_001550at 1727.351 kb on - strand, within ABIE53_001550at 1727.370 kb on + strand, within ABIE53_001550at 1727.371 kb on - strand, within ABIE53_001550at 1727.371 kb on - strand, within ABIE53_001550at 1727.371 kb on - strand, within ABIE53_001550at 1727.515 kb on + strand, within ABIE53_001550at 1727.515 kb on + strand, within ABIE53_001550at 1727.515 kb on + strand, within ABIE53_001550at 1727.516 kb on - strand, within ABIE53_001550at 1727.516 kb on - strand, within ABIE53_001550at 1727.516 kb on - strand, within ABIE53_001550at 1727.517 kb on + strand, within ABIE53_001550at 1727.517 kb on + strand, within ABIE53_001550at 1727.517 kb on + strand, within ABIE53_001550at 1727.518 kb on - strand, within ABIE53_001550at 1727.536 kb on + strand, within ABIE53_001550at 1727.537 kb on - strand, within ABIE53_001550at 1727.676 kb on - strandat 1727.686 kb on + strandat 1727.686 kb on + strandat 1727.687 kb on - strandat 1727.687 kb on - strandat 1727.692 kb on + strandat 1727.800 kb on - strandat 1727.800 kb on - strandat 1727.800 kb on - strandat 1727.887 kb on + strand, within ABIE53_001551at 1727.887 kb on + strand, within ABIE53_001551at 1727.888 kb on - strand, within ABIE53_001551at 1728.034 kb on - strand, within ABIE53_001552at 1728.042 kb on + strand, within ABIE53_001552at 1728.042 kb on + strand, within ABIE53_001552at 1728.107 kb on - strandat 1728.146 kb on + strandat 1728.392 kb on - strand, within ABIE53_001553at 1728.432 kb on - strand, within ABIE53_001553at 1728.455 kb on + strand, within ABIE53_001553at 1728.605 kb on + strand, within ABIE53_001553at 1728.606 kb on - strand, within ABIE53_001553

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Pyridoxal 1 mM
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1,726,069 - -0.7
1,726,069 - -0.7
1,726,123 - +0.7
1,726,230 + -0.5
1,726,230 + +0.1
1,726,231 - -0.2
1,726,231 - -0.9
1,726,231 - +0.2
1,726,305 + ABIE53_001549 0.18 -2.3
1,726,305 + ABIE53_001549 0.18 +0.8
1,726,305 + ABIE53_001549 0.18 -1.2
1,726,305 + ABIE53_001549 0.18 -2.6
1,726,305 + ABIE53_001549 0.18 -1.2
1,726,305 + ABIE53_001549 0.18 -1.0
1,726,607 + -0.4
1,726,682 + -1.0
1,726,682 + -0.7
1,726,682 + -0.3
1,726,682 + -1.2
1,726,682 + +0.9
1,726,682 + -1.3
1,726,682 + -1.6
1,726,682 + -0.4
1,726,682 + -0.5
1,726,682 + -1.3
1,726,683 - +1.1
1,726,683 - -0.4
1,726,683 - -2.5
1,726,683 - +0.5
1,726,683 - +0.2
1,726,683 - -0.0
1,726,683 - -0.5
1,726,683 - +2.1
1,726,686 + +1.9
1,726,837 + ABIE53_001550 0.13 -0.7
1,726,837 + ABIE53_001550 0.13 -0.6
1,726,837 + ABIE53_001550 0.13 -0.6
1,726,837 + ABIE53_001550 0.13 +1.1
1,726,837 + ABIE53_001550 0.13 +1.1
1,726,837 + ABIE53_001550 0.13 -0.0
1,726,838 - ABIE53_001550 0.13 -1.0
1,726,838 - ABIE53_001550 0.13 +0.3
1,726,838 - ABIE53_001550 0.13 +0.2
1,726,838 - ABIE53_001550 0.13 -0.7
1,726,838 - ABIE53_001550 0.13 -0.6
1,726,838 - ABIE53_001550 0.13 -0.9
1,726,838 - ABIE53_001550 0.13 -0.7
1,726,838 - ABIE53_001550 0.13 -0.2
1,726,838 - ABIE53_001550 0.13 +2.1
1,726,838 - ABIE53_001550 0.13 -0.5
1,726,840 - ABIE53_001550 0.13 -0.2
1,726,849 + ABIE53_001550 0.14 +2.1
1,726,849 + ABIE53_001550 0.14 -0.5
1,726,850 - ABIE53_001550 0.14 -0.0
1,726,850 - ABIE53_001550 0.14 +0.3
1,726,850 - ABIE53_001550 0.14 +1.4
1,726,850 - ABIE53_001550 0.14 +0.9
1,726,850 - ABIE53_001550 0.14 +0.7
1,726,867 + ABIE53_001550 0.16 +0.2
1,726,970 - ABIE53_001550 0.26 -0.3
1,726,970 - ABIE53_001550 0.26 -0.7
1,726,970 - ABIE53_001550 0.26 +1.5
1,726,993 + ABIE53_001550 0.29 -0.7
1,726,993 + ABIE53_001550 0.29 -0.7
1,726,994 - ABIE53_001550 0.29 +1.4
1,726,994 - ABIE53_001550 0.29 -0.2
1,727,099 - ABIE53_001550 0.39 -0.7
1,727,099 - ABIE53_001550 0.39 -2.8
1,727,117 - ABIE53_001550 0.41 +1.1
1,727,117 - ABIE53_001550 0.41 -0.6
1,727,284 + ABIE53_001550 0.58 +2.1
1,727,284 + ABIE53_001550 0.58 -0.5
1,727,284 + ABIE53_001550 0.58 +0.1
1,727,284 + ABIE53_001550 0.58 +0.7
1,727,285 - ABIE53_001550 0.59 +0.9
1,727,287 - ABIE53_001550 0.59 +1.3
1,727,287 - ABIE53_001550 0.59 +0.0
1,727,350 + ABIE53_001550 0.65 +0.2
1,727,350 + ABIE53_001550 0.65 +0.4
1,727,350 + ABIE53_001550 0.65 +0.5
1,727,350 + ABIE53_001550 0.65 -0.6
1,727,351 - ABIE53_001550 0.65 +0.7
1,727,351 - ABIE53_001550 0.65 -0.8
1,727,370 + ABIE53_001550 0.67 +1.0
1,727,371 - ABIE53_001550 0.67 +1.5
1,727,371 - ABIE53_001550 0.67 -0.5
1,727,371 - ABIE53_001550 0.67 +1.1
1,727,515 + ABIE53_001550 0.82 +0.2
1,727,515 + ABIE53_001550 0.82 +0.7
1,727,515 + ABIE53_001550 0.82 +2.9
1,727,516 - ABIE53_001550 0.82 +0.1
1,727,516 - ABIE53_001550 0.82 +0.0
1,727,516 - ABIE53_001550 0.82 +0.4
1,727,517 + ABIE53_001550 0.82 -0.3
1,727,517 + ABIE53_001550 0.82 +1.1
1,727,517 + ABIE53_001550 0.82 -1.2
1,727,518 - ABIE53_001550 0.82 -1.7
1,727,536 + ABIE53_001550 0.84 +1.6
1,727,537 - ABIE53_001550 0.84 -0.5
1,727,676 - -0.6
1,727,686 + +1.1
1,727,686 + -1.8
1,727,687 - -1.0
1,727,687 - +0.5
1,727,692 + -0.2
1,727,800 - -0.9
1,727,800 - -0.9
1,727,800 - -1.6
1,727,887 + ABIE53_001551 0.11 +1.5
1,727,887 + ABIE53_001551 0.11 +0.2
1,727,888 - ABIE53_001551 0.12 +0.1
1,728,034 - ABIE53_001552 0.56 -0.4
1,728,042 + ABIE53_001552 0.65 -0.6
1,728,042 + ABIE53_001552 0.65 -0.2
1,728,107 - -1.5
1,728,146 + -1.3
1,728,392 - ABIE53_001553 0.18 -1.1
1,728,432 - ABIE53_001553 0.20 +0.9
1,728,455 + ABIE53_001553 0.21 -2.4
1,728,605 + ABIE53_001553 0.30 -0.7
1,728,606 - ABIE53_001553 0.30 -0.4

Or see this region's nucleotide sequence