Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18920 and BWI76_RS18925 are separated by 39 nucleotides BWI76_RS18925 and BWI76_RS18930 overlap by 4 nucleotides
BWI76_RS18920: BWI76_RS18920 - ATP phosphoribosyltransferase, at 3,924,599 to 3,925,498
_RS18920
BWI76_RS18925: BWI76_RS18925 - histidinol dehydrogenase, at 3,925,538 to 3,926,842
_RS18925
BWI76_RS18930: BWI76_RS18930 - histidinol-phosphate transaminase, at 3,926,839 to 3,927,900
_RS18930
Position (kb)
3925
3926
3927 Strain fitness (log2 ratio)
-2
-1
0
1 at 3924.568 kb on + strand at 3924.568 kb on + strand at 3924.578 kb on + strand at 3924.586 kb on - strand at 3924.586 kb on - strand at 3924.586 kb on - strand at 3924.698 kb on - strand, within BWI76_RS18920 at 3924.720 kb on - strand, within BWI76_RS18920 at 3924.867 kb on - strand, within BWI76_RS18920 at 3925.011 kb on + strand, within BWI76_RS18920 at 3925.425 kb on - strand at 3925.663 kb on + strand at 3925.795 kb on + strand, within BWI76_RS18925 at 3925.961 kb on + strand at 3925.969 kb on - strand, within BWI76_RS18925 at 3926.059 kb on + strand, within BWI76_RS18925 at 3926.096 kb on + strand, within BWI76_RS18925 at 3926.508 kb on + strand, within BWI76_RS18925 at 3926.719 kb on - strand at 3926.802 kb on + strand at 3926.851 kb on + strand at 3926.960 kb on + strand, within BWI76_RS18930 at 3927.342 kb on + strand, within BWI76_RS18930 at 3927.645 kb on - strand, within BWI76_RS18930 at 3927.841 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.5 x remove 3,924,568 + +0.5 3,924,568 + -0.5 3,924,578 + -0.1 3,924,586 - -2.6 3,924,586 - -1.9 3,924,586 - -1.3 3,924,698 - BWI76_RS18920 0.11 -1.8 3,924,720 - BWI76_RS18920 0.13 -1.9 3,924,867 - BWI76_RS18920 0.30 -1.3 3,925,011 + BWI76_RS18920 0.46 -2.6 3,925,425 - -2.3 3,925,663 + -2.7 3,925,795 + BWI76_RS18925 0.20 +0.1 3,925,961 + +1.5 3,925,969 - BWI76_RS18925 0.33 -2.1 3,926,059 + BWI76_RS18925 0.40 -1.5 3,926,096 + BWI76_RS18925 0.43 -0.9 3,926,508 + BWI76_RS18925 0.74 -1.2 3,926,719 - -2.0 3,926,802 + -2.2 3,926,851 + -1.9 3,926,960 + BWI76_RS18930 0.11 -2.4 3,927,342 + BWI76_RS18930 0.47 -2.2 3,927,645 - BWI76_RS18930 0.76 -2.6 3,927,841 + -2.4
Or see this region's nucleotide sequence