Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1530

Experiment: MoYLS4 with Aluminum Chloride 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1529 and DVU1530 are separated by 136 nucleotidesDVU1530 and DVU1531 are separated by 125 nucleotidesDVU1531 and coaD overlap by 25 nucleotides DVU1529: DVU1529 - decarboxylase family protein (TIGR), at 1,597,222 to 1,597,878 DVU1529 DVU1530: DVU1530 - metallo-beta-lactamase family protein (TIGR), at 1,598,015 to 1,599,625 DVU1530 DVU1531: DVU1531 - methyltransferase, putative (TIGR), at 1,599,751 to 1,600,323 DVU1531 DVU1532: coaD - pantetheine-phosphate adenylyltransferase (TIGR), at 1,600,299 to 1,600,859 coaD Position (kb) 1598 1599 1600Strain fitness (log2 ratio) -2 -1 0 1at 1597.070 kb on - strandat 1597.151 kb on - strandat 1597.166 kb on + strandat 1597.166 kb on + strandat 1597.174 kb on - strandat 1597.174 kb on - strandat 1597.174 kb on - strandat 1597.186 kb on + strandat 1597.187 kb on + strandat 1597.276 kb on - strandat 1597.291 kb on + strand, within DVU1529at 1597.425 kb on - strand, within DVU1529at 1597.425 kb on - strand, within DVU1529at 1597.468 kb on - strand, within DVU1529at 1597.474 kb on + strand, within DVU1529at 1597.535 kb on + strand, within DVU1529at 1597.543 kb on + strand, within DVU1529at 1597.548 kb on + strand, within DVU1529at 1597.556 kb on - strand, within DVU1529at 1597.721 kb on - strand, within DVU1529at 1597.773 kb on - strand, within DVU1529at 1597.807 kb on - strand, within DVU1529at 1597.819 kb on - strandat 1597.823 kb on + strandat 1598.007 kb on - strandat 1598.074 kb on + strandat 1598.074 kb on + strandat 1598.082 kb on - strandat 1598.119 kb on - strandat 1598.209 kb on - strand, within DVU1530at 1598.255 kb on + strand, within DVU1530at 1598.272 kb on + strand, within DVU1530at 1598.380 kb on + strand, within DVU1530at 1598.550 kb on + strand, within DVU1530at 1598.717 kb on + strand, within DVU1530at 1598.785 kb on + strand, within DVU1530at 1598.785 kb on + strand, within DVU1530at 1598.793 kb on + strand, within DVU1530at 1598.860 kb on + strand, within DVU1530at 1598.860 kb on + strand, within DVU1530at 1599.136 kb on - strand, within DVU1530at 1599.205 kb on + strand, within DVU1530at 1599.306 kb on - strand, within DVU1530at 1599.390 kb on + strand, within DVU1530at 1599.390 kb on + strand, within DVU1530at 1599.496 kb on + strandat 1599.504 kb on - strandat 1599.544 kb on + strandat 1599.552 kb on - strandat 1600.007 kb on + strand, within DVU1531at 1600.059 kb on + strand, within DVU1531at 1600.177 kb on - strand, within DVU1531at 1600.189 kb on - strand, within DVU1531at 1600.206 kb on + strand, within DVU1531at 1600.250 kb on + strand, within DVU1531at 1600.258 kb on - strand, within DVU1531

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum Chloride 10mM
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1,597,070 - -1.5
1,597,151 - +0.2
1,597,166 + +0.2
1,597,166 + +0.1
1,597,174 - +0.8
1,597,174 - +0.7
1,597,174 - +1.4
1,597,186 + -0.1
1,597,187 + +0.1
1,597,276 - -0.2
1,597,291 + DVU1529 0.11 +0.4
1,597,425 - DVU1529 0.31 -0.1
1,597,425 - DVU1529 0.31 -1.1
1,597,468 - DVU1529 0.37 -0.9
1,597,474 + DVU1529 0.38 -0.9
1,597,535 + DVU1529 0.48 -0.3
1,597,543 + DVU1529 0.49 -0.6
1,597,548 + DVU1529 0.50 -1.9
1,597,556 - DVU1529 0.51 +1.1
1,597,721 - DVU1529 0.76 +1.1
1,597,773 - DVU1529 0.84 +0.2
1,597,807 - DVU1529 0.89 +0.0
1,597,819 - +0.3
1,597,823 + -0.5
1,598,007 - -2.0
1,598,074 + -1.5
1,598,074 + +0.2
1,598,082 - -0.3
1,598,119 - +0.7
1,598,209 - DVU1530 0.12 -2.4
1,598,255 + DVU1530 0.15 -0.3
1,598,272 + DVU1530 0.16 -0.2
1,598,380 + DVU1530 0.23 -1.0
1,598,550 + DVU1530 0.33 -0.1
1,598,717 + DVU1530 0.44 -0.8
1,598,785 + DVU1530 0.48 -1.9
1,598,785 + DVU1530 0.48 -0.6
1,598,793 + DVU1530 0.48 -1.8
1,598,860 + DVU1530 0.52 +0.1
1,598,860 + DVU1530 0.52 -0.2
1,599,136 - DVU1530 0.70 -0.3
1,599,205 + DVU1530 0.74 -0.9
1,599,306 - DVU1530 0.80 -0.3
1,599,390 + DVU1530 0.85 -0.6
1,599,390 + DVU1530 0.85 +0.9
1,599,496 + +1.0
1,599,504 - -0.8
1,599,544 + +0.1
1,599,552 - +0.0
1,600,007 + DVU1531 0.45 +0.5
1,600,059 + DVU1531 0.54 +0.1
1,600,177 - DVU1531 0.74 -0.1
1,600,189 - DVU1531 0.76 -0.3
1,600,206 + DVU1531 0.79 +0.1
1,600,250 + DVU1531 0.87 +0.1
1,600,258 - DVU1531 0.88 +0.4

Or see this region's nucleotide sequence