Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04605

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
1,001,196	-				-0.7
1,001,203	+				-2.1
1,001,211	-				-0.1
1,001,211	-				-0.4
1,001,267	+				+0.1
1,001,286	+				+0.8
1,001,300	+				+0.2
1,001,300	+				-0.2
1,001,300	+				-0.2
1,001,300	+				-0.4
1,001,308	-		HSERO_RS04595	0.11	+0.4
1,001,308	-		HSERO_RS04595	0.11	+0.7
1,001,308	-		HSERO_RS04595	0.11	-0.8
1,001,308	-		HSERO_RS04595	0.11	-0.4
1,001,345	-		HSERO_RS04595	0.21	+0.0
1,001,365	+		HSERO_RS04595	0.27	-0.5
1,001,370	+		HSERO_RS04595	0.28	-0.9
1,001,375	+		HSERO_RS04595	0.29	-0.1
1,001,385	+		HSERO_RS04595	0.32	-1.1
1,001,393	-		HSERO_RS04595	0.34	-0.2
1,001,408	+		HSERO_RS04595	0.39	-0.0
1,001,413	+		HSERO_RS04595	0.40	-0.5
1,001,423	+		HSERO_RS04595	0.43	-0.2
1,001,460	-		HSERO_RS04595	0.53	-0.1
1,001,460	-		HSERO_RS04595	0.53	+0.2
1,001,466	-		HSERO_RS04595	0.55	-0.1
1,001,470	+		HSERO_RS04595	0.56	-1.0
1,001,666	-		HSERO_RS04600	0.11	-1.3
1,001,685	+		HSERO_RS04600	0.14	-0.3
1,001,685	+		HSERO_RS04600	0.14	+0.2
1,001,720	+		HSERO_RS04600	0.21	-0.7
1,001,783	+		HSERO_RS04600	0.34	-0.9
1,001,822	-		HSERO_RS04600	0.41	+0.0
1,001,863	+		HSERO_RS04600	0.50	+1.0
1,001,870	-		HSERO_RS04600	0.51	-0.2
1,001,876	-		HSERO_RS04600	0.52	-0.2
1,001,882	-		HSERO_RS04600	0.53	-1.7
1,001,892	+		HSERO_RS04600	0.55	+0.1
1,001,997	-		HSERO_RS04600	0.76	-0.0
1,002,039	-		HSERO_RS04600	0.84	+0.3
1,002,044	+		HSERO_RS04600	0.85	-0.1
1,002,057	+		HSERO_RS04600	0.88	-0.6
1,002,057	+		HSERO_RS04600	0.88	-0.1
1,002,058	-		HSERO_RS04600	0.88	+2.0
1,002,068	+				-1.1
1,002,122	-				-0.7
1,002,122	-				-0.1
1,002,145	+				+0.3
1,002,193	-		HSERO_RS04605	0.18	-0.4
1,002,209	+		HSERO_RS04605	0.22	-0.2
1,002,209	+		HSERO_RS04605	0.22	-0.2
1,002,217	-		HSERO_RS04605	0.24	-0.7
1,002,219	+		HSERO_RS04605	0.24	-0.3
1,002,249	-		HSERO_RS04605	0.32	-0.1
1,002,281	+		HSERO_RS04605	0.39	-0.5
1,002,281	+		HSERO_RS04605	0.39	-0.1
1,002,285	-		HSERO_RS04605	0.40	+0.0
1,002,325	+		HSERO_RS04605	0.50	-0.5
1,002,358	+		HSERO_RS04605	0.58	+0.4
1,002,393	+		HSERO_RS04605	0.66	-0.1
1,002,421	-		HSERO_RS04605	0.73	-0.1
1,002,573	+				-0.3
1,002,578	+				+0.3
1,002,597	-				-0.5
1,002,736	+				-1.2
1,002,742	+				-1.2
1,002,750	-				+0.6
1,002,756	-				-0.5
1,002,756	-				-0.4
1,002,799	+				-0.2
1,002,809	+				+1.1
1,002,809	+				-0.3
1,002,809	+				+0.1
1,002,809	+				-0.5
1,002,809	+				-1.6
1,002,809	+				-0.2
1,002,809	+				-0.3
1,002,809	+				-0.4
1,002,809	+				+0.1
1,002,809	+				+0.5
1,002,809	+				+0.5
1,002,809	+				-0.4
1,002,817	-				+0.1
1,002,817	-				-0.5
1,002,817	-				-0.4
1,002,817	-				-0.1
1,002,817	-				+0.5
1,002,817	-				+0.1
1,002,817	-				-1.3
1,002,817	-				-2.1
1,002,817	-				-0.3
1,002,829	-				+0.1
1,002,830	-				-0.8
1,002,832	+				-0.6
1,002,832	+				-0.4
1,002,832	+				+0.2
1,002,832	+				-0.2
1,002,832	+				-1.1
1,002,832	+				-1.5
1,002,857	+				-1.0
1,002,857	+				+0.2
1,002,881	+				+0.1
1,002,881	+				-0.4
1,002,881	+				+0.5
1,002,881	+				-1.0
1,002,881	+				-0.5
1,002,881	+				-0.2
1,002,881	+				-0.1
1,002,881	+				+0.1
1,002,881	+				+0.1
1,002,881	+				-0.4
1,002,881	+				+0.1
1,002,881	+				-0.5
1,002,882	+				-0.3
1,002,887	+				-0.2
1,002,887	+				+0.0
1,002,887	+				-0.8
1,002,888	+				-0.7
1,002,888	+				-0.2
1,002,888	+				-0.8
1,002,888	+				-0.2
1,002,888	+				+0.1
1,002,888	+				-0.3
1,002,889	-				-1.0
1,002,889	-				+0.0
1,002,889	-				-0.2
1,002,889	-				-0.7
1,002,889	-				+0.7
1,002,889	-				+0.6
1,002,889	-				-0.2
1,002,889	-				+0.4
1,002,889	-				+1.2
1,002,889	-				+0.5
1,002,889	-				-0.2
1,002,895	-				+0.6
1,002,895	-				+0.5
1,002,896	-				-0.9
1,002,896	-				-0.0
1,002,896	-				-0.8
1,002,896	-				-0.3
1,002,896	-				-0.7
1,002,898	-				+0.1
1,002,970	+				-0.4
1,002,980	+				-0.2
1,002,980	+				+0.1
1,002,980	+				-0.1
1,002,980	+				-0.0
1,002,980	+				+0.0
1,002,980	+				-0.6
1,002,980	+				-1.2
1,002,980	+				-0.1
1,002,980	+				+0.9
1,002,980	+				-0.2
1,002,980	+				-0.4
1,002,980	+				-0.4
1,002,983	+				-0.1
1,002,988	-				-1.0
1,002,988	-				+0.4
1,002,988	-				-0.2
1,002,988	-				-0.4
1,002,988	-				+0.9
1,002,988	-				-0.6
1,002,988	-				-1.8
1,002,988	-				-0.4
1,002,988	-				-0.1
1,002,988	-				+1.2
1,002,988	-				+0.4
1,002,988	-				+1.8
1,002,988	-				-0.3
1,002,991	+				-0.5
1,002,991	+				-0.7
1,002,991	+				-0.2
1,002,991	+				-0.1
1,002,992	+				-0.1
1,002,999	-				+0.8
1,003,000	-				-0.7
1,003,000	-				+0.4
1,003,000	-				-0.1
1,003,000	-				-0.9
1,003,000	-				-0.4
1,003,000	-				+0.1
1,003,002	+				-0.4
1,003,002	+				+0.0
1,003,005	+				+0.5
1,003,005	-				-0.7
1,003,005	-				-0.6
1,003,007	+				-1.0
1,003,007	+				-1.3
1,003,007	+				-1.0
1,003,010	-				+0.6
1,003,010	-				-0.5
1,003,015	-				-0.5
1,003,031	-				-0.1
1,003,062	-				-0.2
1,003,062	-				-0.4
1,003,082	+		HSERO_RS04610	0.11	-0.5
1,003,101	+		HSERO_RS04610	0.13	+0.2
1,003,107	+		HSERO_RS04610	0.14	+0.1
1,003,115	-		HSERO_RS04610	0.14	-0.4
1,003,145	-		HSERO_RS04610	0.17	-0.6
1,003,174	+		HSERO_RS04610	0.20	-0.1
1,003,174	+		HSERO_RS04610	0.20	-1.2
1,003,176	-		HSERO_RS04610	0.20	+0.0
1,003,179	+		HSERO_RS04610	0.20	+0.2
1,003,179	+		HSERO_RS04610	0.20	-0.2
1,003,187	-				+1.0
1,003,190	-				+2.6
1,003,200	-		HSERO_RS04610	0.22	+0.4
1,003,235	+		HSERO_RS04610	0.25	-0.1
1,003,271	+		HSERO_RS04610	0.28	-0.4
1,003,271	+		HSERO_RS04610	0.28	-0.2
1,003,271	+		HSERO_RS04610	0.28	-0.4
1,003,271	+		HSERO_RS04610	0.28	-0.3
1,003,271	+		HSERO_RS04610	0.28	-0.2
1,003,277	+		HSERO_RS04610	0.29	+0.5
1,003,277	+		HSERO_RS04610	0.29	+0.4
1,003,277	+		HSERO_RS04610	0.29	+0.2
1,003,279	-		HSERO_RS04610	0.29	-0.8
1,003,279	-		HSERO_RS04610	0.29	+0.6
1,003,279	-		HSERO_RS04610	0.29	-0.3
1,003,279	-		HSERO_RS04610	0.29	-0.6
1,003,279	-		HSERO_RS04610	0.29	+1.0
1,003,285	-		HSERO_RS04610	0.29	-0.2
1,003,303	+				-0.8
1,003,304	+		HSERO_RS04610	0.31	-0.8
1,003,329	+		HSERO_RS04610	0.33	-0.1
1,003,329	+		HSERO_RS04610	0.33	-0.1
1,003,329	+		HSERO_RS04610	0.33	-0.5
1,003,329	+		HSERO_RS04610	0.33	+0.1
1,003,329	+		HSERO_RS04610	0.33	+0.3
1,003,330	+		HSERO_RS04610	0.34	-0.4
1,003,337	-		HSERO_RS04610	0.34	-0.5
1,003,337	-		HSERO_RS04610	0.34	-0.1
1,003,337	-		HSERO_RS04610	0.34	+0.2
1,003,337	-		HSERO_RS04610	0.34	-0.4
1,003,337	-		HSERO_RS04610	0.34	+1.2
1,003,337	-		HSERO_RS04610	0.34	+0.4
1,003,337	-		HSERO_RS04610	0.34	-0.5
1,003,356	-		HSERO_RS04610	0.36	-0.6
1,003,370	-		HSERO_RS04610	0.37	-0.7
1,003,375	+		HSERO_RS04610	0.38	+0.0
1,003,407	-		HSERO_RS04610	0.40	-0.1
1,003,409	+				+0.4
1,003,412	-		HSERO_RS04610	0.41	-3.6
1,003,417	-		HSERO_RS04610	0.41	-1.1
1,003,439	+		HSERO_RS04610	0.43	+0.8
1,003,439	+		HSERO_RS04610	0.43	+0.1
1,003,443	-		HSERO_RS04610	0.44	-0.6
1,003,443	-		HSERO_RS04610	0.44	+0.8
1,003,443	-		HSERO_RS04610	0.44	-0.9
1,003,444	+		HSERO_RS04610	0.44	+0.1
1,003,447	-		HSERO_RS04610	0.44	+0.2
1,003,447	-		HSERO_RS04610	0.44	-0.2
1,003,447	-				+0.5
1,003,456	+		HSERO_RS04610	0.45	-0.1
1,003,482	-		HSERO_RS04610	0.47	-0.5
1,003,498	-		HSERO_RS04610	0.49	-0.2
1,003,498	-		HSERO_RS04610	0.49	+0.2
1,003,503	-		HSERO_RS04610	0.49	+0.2
1,003,503	-		HSERO_RS04610	0.49	-0.4
1,003,527	+		HSERO_RS04610	0.51	-0.4