Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01365

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01360 and HSERO_RS01365 overlap by 4 nucleotidesHSERO_RS01365 and HSERO_RS01370 are separated by 209 nucleotides HSERO_RS01360: HSERO_RS01360 - LacI family transcription regulator, at 292,958 to 293,974 _RS01360 HSERO_RS01365: HSERO_RS01365 - TetR family transcriptional regulator, at 293,971 to 294,603 _RS01365 HSERO_RS01370: HSERO_RS01370 - MFS transporter, at 294,813 to 296,030 _RS01370 Position (kb) 293 294 295Strain fitness (log2 ratio) -1 0 1at 293.769 kb on - strand, within HSERO_RS01360at 293.922 kb on - strandat 294.059 kb on - strand, within HSERO_RS01365at 294.233 kb on + strand, within HSERO_RS01365at 295.060 kb on + strand, within HSERO_RS01370at 295.145 kb on + strand, within HSERO_RS01370at 295.203 kb on - strand, within HSERO_RS01370at 295.334 kb on + strand, within HSERO_RS01370at 295.359 kb on + strand, within HSERO_RS01370at 295.383 kb on - strand, within HSERO_RS01370at 295.548 kb on + strand, within HSERO_RS01370at 295.550 kb on - strand, within HSERO_RS01370at 295.591 kb on - strand, within HSERO_RS01370

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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293,769 - HSERO_RS01360 0.80 +1.3
293,922 - -0.0
294,059 - HSERO_RS01365 0.14 -0.4
294,233 + HSERO_RS01365 0.41 -0.6
295,060 + HSERO_RS01370 0.20 -0.6
295,145 + HSERO_RS01370 0.27 -0.6
295,203 - HSERO_RS01370 0.32 -1.2
295,334 + HSERO_RS01370 0.43 -0.9
295,359 + HSERO_RS01370 0.45 -0.4
295,383 - HSERO_RS01370 0.47 -0.3
295,548 + HSERO_RS01370 0.60 -0.3
295,550 - HSERO_RS01370 0.61 -0.2
295,591 - HSERO_RS01370 0.64 -0.5

Or see this region's nucleotide sequence