Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005625

Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Pyridoxal 1 mM
1,919,688	-		ABIE53_005624	0.31	-0.5
1,919,695	+		ABIE53_005624	0.32	+0.5
1,919,696	-		ABIE53_005624	0.32	-0.2
1,919,696	-		ABIE53_005624	0.32	-0.8
1,919,796	+		ABIE53_005624	0.39	+0.5
1,919,807	+		ABIE53_005624	0.40	-0.2
1,919,807	+		ABIE53_005624	0.40	-0.5
1,919,808	-		ABIE53_005624	0.40	+1.5
1,919,808	-		ABIE53_005624	0.40	-0.2
1,919,810	+		ABIE53_005624	0.40	-0.5
1,919,810	+		ABIE53_005624	0.40	-0.3
1,919,811	-		ABIE53_005624	0.41	-1.0
1,919,811	-		ABIE53_005624	0.41	-0.1
1,919,811	-		ABIE53_005624	0.41	+0.1
1,919,819	+		ABIE53_005624	0.41	-0.2
1,919,819	+		ABIE53_005624	0.41	+0.9
1,919,820	-		ABIE53_005624	0.41	-0.5
1,919,820	-		ABIE53_005624	0.41	+0.2
1,919,820	-		ABIE53_005624	0.41	-0.0
1,919,820	-		ABIE53_005624	0.41	+0.2
1,919,827	-		ABIE53_005624	0.42	-1.6
1,919,918	-		ABIE53_005624	0.48	+0.6
1,920,004	+		ABIE53_005624	0.55	-0.3
1,920,112	+		ABIE53_005624	0.63	-0.2
1,920,113	-		ABIE53_005624	0.63	+2.3
1,920,160	+		ABIE53_005624	0.66	-1.6
1,920,161	-		ABIE53_005624	0.66	-2.0
1,920,161	-		ABIE53_005624	0.66	-1.0
1,920,166	+		ABIE53_005624	0.67	+0.8
1,920,167	-		ABIE53_005624	0.67	-0.2
1,920,175	+		ABIE53_005624	0.67	-0.8
1,920,204	+		ABIE53_005624	0.69	+2.3
1,920,205	-		ABIE53_005624	0.70	-0.8
1,920,205	-		ABIE53_005624	0.70	-1.6
1,920,205	-		ABIE53_005624	0.70	-0.0
1,920,346	-		ABIE53_005624	0.80	-0.0
1,920,430	-		ABIE53_005624	0.86	-1.5
1,920,430	-		ABIE53_005624	0.86	+1.5
1,920,433	+		ABIE53_005624	0.86	-0.1
1,920,491	+				+1.5
1,920,491	+				+0.1
1,920,491	+				+1.5
1,920,492	-				-0.0
1,920,492	-				+0.5
1,920,492	-				-1.3
1,920,492	-				+0.5
1,920,496	+				+1.8
1,920,496	+				+0.5
1,920,516	+				+1.0
1,920,590	-				-0.0
1,920,610	-				-0.5
1,920,618	+				+0.4
1,920,618	+				-1.3
1,920,691	-				+0.8
1,920,725	-				-0.0
1,920,725	-				+1.0
1,920,725	-				-0.4
1,920,750	+				-0.8
1,920,795	-		ABIE53_005625	0.11	-0.2
1,920,795	-		ABIE53_005625	0.11	+2.3
1,920,798	-		ABIE53_005625	0.11	-0.5
1,920,798	-		ABIE53_005625	0.11	+0.1
1,920,798	-		ABIE53_005625	0.11	-2.0
1,920,798	-		ABIE53_005625	0.11	-0.6
1,920,820	+		ABIE53_005625	0.13	+0.1
1,920,858	+		ABIE53_005625	0.16	+0.1
1,920,859	-		ABIE53_005625	0.16	-2.5
1,920,908	+		ABIE53_005625	0.19	+1.1
1,920,913	+		ABIE53_005625	0.20	-0.5
1,920,966	+		ABIE53_005625	0.24	-2.0
1,920,966	+		ABIE53_005625	0.24	-0.0
1,920,966	+		ABIE53_005625	0.24	-0.2
1,920,966	+		ABIE53_005625	0.24	-0.3
1,920,967	-		ABIE53_005625	0.24	-0.4
1,920,967	-		ABIE53_005625	0.24	-1.2
1,920,967	-		ABIE53_005625	0.24	-0.0
1,920,967	-		ABIE53_005625	0.24	+1.5
1,921,028	-		ABIE53_005625	0.28	+0.5
1,921,057	+		ABIE53_005625	0.31	-1.3
1,921,141	+		ABIE53_005625	0.37	-0.2
1,921,141	+		ABIE53_005625	0.37	-0.6
1,921,142	-		ABIE53_005625	0.37	+0.4
1,921,142	-		ABIE53_005625	0.37	-0.7
1,921,194	+		ABIE53_005625	0.41	+0.4
1,921,212	-		ABIE53_005625	0.42	-0.5
1,921,217	+		ABIE53_005625	0.43	-0.3
1,921,217	+		ABIE53_005625	0.43	-0.0
1,921,217	+		ABIE53_005625	0.43	-0.9
1,921,217	+		ABIE53_005625	0.43	-1.1
1,921,218	-		ABIE53_005625	0.43	-1.8
1,921,218	-		ABIE53_005625	0.43	+0.5
1,921,218	-		ABIE53_005625	0.43	+0.5
1,921,218	-		ABIE53_005625	0.43	-0.8
1,921,221	+		ABIE53_005625	0.43	-1.0
1,921,221	+		ABIE53_005625	0.43	-0.2
1,921,221	+		ABIE53_005625	0.43	-0.3
1,921,221	+		ABIE53_005625	0.43	-1.0
1,921,221	+		ABIE53_005625	0.43	+1.5
1,921,221	+		ABIE53_005625	0.43	-0.8
1,921,222	-		ABIE53_005625	0.43	-1.6
1,921,222	-		ABIE53_005625	0.43	+0.1
1,921,222	-		ABIE53_005625	0.43	+1.0
1,921,222	-		ABIE53_005625	0.43	+1.2
1,921,222	-		ABIE53_005625	0.43	+0.5
1,921,223	+		ABIE53_005625	0.43	-0.3
1,921,223	+		ABIE53_005625	0.43	-0.4
1,921,223	+		ABIE53_005625	0.43	+0.5
1,921,277	-		ABIE53_005625	0.47	+3.0
1,921,446	-		ABIE53_005625	0.60	-0.6
1,921,446	-		ABIE53_005625	0.60	+0.1
1,921,578	-		ABIE53_005625	0.70	-0.2
1,921,578	-		ABIE53_005625	0.70	-0.5
1,921,578	-		ABIE53_005625	0.70	-0.8
1,921,578	-		ABIE53_005625	0.70	+1.0
1,921,578	-		ABIE53_005625	0.70	-1.3
1,921,578	-		ABIE53_005625	0.70	+2.5
1,921,640	-		ABIE53_005625	0.75	-1.0
1,921,673	+		ABIE53_005625	0.77	+0.1
1,921,685	-		ABIE53_005625	0.78	-2.0
1,921,728	+		ABIE53_005625	0.81	-1.0
1,921,728	+		ABIE53_005625	0.81	+0.1
1,921,728	+		ABIE53_005625	0.81	-1.3
1,921,728	+		ABIE53_005625	0.81	-0.8
1,921,729	-		ABIE53_005625	0.81	-0.7
1,921,729	-		ABIE53_005625	0.81	-0.8
1,921,815	-		ABIE53_005625	0.88	+0.1
1,922,047	+				-0.1
1,922,047	+				+0.2
1,922,047	+				-2.0
1,922,048	-				+0.5
1,922,048	-				+1.9
1,922,075	-				-0.3
1,922,077	+				-1.0
1,922,077	+				-1.0
1,922,078	-				+0.3
1,922,093	+				+0.3
1,922,094	-				+0.5
1,922,094	-				-1.1
1,922,107	+				-0.0
1,922,108	-				+0.0
1,922,174	-		ABIE53_005626	0.35	-0.7
1,922,257	-		ABIE53_005626	0.71	+0.1
1,922,257	-		ABIE53_005626	0.71	-0.5
1,922,268	+		ABIE53_005626	0.76	-0.3
1,922,268	+		ABIE53_005626	0.76	-0.2
1,922,268	+		ABIE53_005626	0.76	-0.9
1,922,268	+		ABIE53_005626	0.76	-0.2
1,922,268	+		ABIE53_005626	0.76	-1.2
1,922,357	+				-1.1
1,922,358	-				-1.3
1,922,387	+				-1.0
1,922,677	+				-1.0
1,922,678	-				+2.5
1,922,758	+				-1.4
1,922,759	-				+1.5
1,922,759	-				+1.2
1,922,930	-				-0.5
1,922,956	+				-0.8
1,922,956	+				+0.1
1,922,957	-				-1.3
1,922,967	+				+1.5
1,922,968	-				-0.8