Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003942 and ABIE53_003943 are separated by 350 nucleotides ABIE53_003943 and ABIE53_003944 are separated by 24 nucleotides
ABIE53_003942: ABIE53_003942 - hypothetical protein, at 90,260 to 91,717
_003942
ABIE53_003943: ABIE53_003943 - RNA polymerase sigma-70 factor (ECF subfamily), at 92,068 to 92,598
_003943
ABIE53_003944: ABIE53_003944 - anti-sigma factor RsiW, at 92,623 to 93,609
_003944
Position (kb) 92
93 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 91.071 kb on - strand, within ABIE53_003942 at 91.423 kb on + strand, within ABIE53_003942 at 91.423 kb on + strand, within ABIE53_003942 at 91.424 kb on - strand, within ABIE53_003942 at 91.525 kb on + strand, within ABIE53_003942 at 91.526 kb on - strand, within ABIE53_003942 at 91.559 kb on - strand, within ABIE53_003942 at 91.832 kb on + strand at 91.832 kb on + strand at 91.832 kb on + strand at 91.833 kb on - strand at 91.833 kb on - strand at 91.854 kb on + strand at 91.854 kb on + strand at 91.855 kb on - strand at 92.006 kb on - strand at 92.006 kb on - strand at 92.014 kb on + strand at 92.015 kb on - strand at 92.046 kb on + strand at 92.236 kb on - strand, within ABIE53_003943 at 92.236 kb on - strand, within ABIE53_003943 at 92.467 kb on + strand, within ABIE53_003943 at 92.468 kb on - strand, within ABIE53_003943 at 92.596 kb on + strand at 92.599 kb on + strand at 92.599 kb on + strand at 92.622 kb on + strand at 92.647 kb on + strand at 92.831 kb on + strand, within ABIE53_003944 at 92.832 kb on - strand, within ABIE53_003944 at 92.832 kb on - strand, within ABIE53_003944 at 92.832 kb on - strand, within ABIE53_003944 at 92.832 kb on - strand, within ABIE53_003944 at 92.934 kb on + strand, within ABIE53_003944 at 92.935 kb on - strand, within ABIE53_003944 at 92.973 kb on + strand, within ABIE53_003944 at 92.974 kb on - strand, within ABIE53_003944 at 92.974 kb on - strand, within ABIE53_003944 at 93.041 kb on + strand, within ABIE53_003944 at 93.041 kb on + strand, within ABIE53_003944 at 93.172 kb on + strand, within ABIE53_003944 at 93.184 kb on + strand, within ABIE53_003944 at 93.186 kb on + strand, within ABIE53_003944 at 93.361 kb on + strand, within ABIE53_003944 at 93.487 kb on + strand, within ABIE53_003944 at 93.487 kb on + strand, within ABIE53_003944 at 93.487 kb on + strand, within ABIE53_003944 at 93.488 kb on - strand, within ABIE53_003944 at 93.488 kb on - strand, within ABIE53_003944 at 93.589 kb on + strand at 93.589 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Pyridoxal 1 mM remove 91,071 - ABIE53_003942 0.56 +0.5 91,423 + ABIE53_003942 0.80 -1.5 91,423 + ABIE53_003942 0.80 +1.2 91,424 - ABIE53_003942 0.80 +1.3 91,525 + ABIE53_003942 0.87 +0.7 91,526 - ABIE53_003942 0.87 -1.3 91,559 - ABIE53_003942 0.89 -0.7 91,832 + -0.3 91,832 + -0.7 91,832 + -1.3 91,833 - +1.5 91,833 - +0.4 91,854 + +0.1 91,854 + +0.3 91,855 - +2.5 92,006 - -0.2 92,006 - +0.5 92,014 + -0.5 92,015 - -0.3 92,046 + -0.0 92,236 - ABIE53_003943 0.32 -0.1 92,236 - ABIE53_003943 0.32 +1.7 92,467 + ABIE53_003943 0.75 +0.9 92,468 - ABIE53_003943 0.75 +1.8 92,596 + -1.8 92,599 + +0.3 92,599 + +0.8 92,622 + -1.5 92,647 + -0.8 92,831 + ABIE53_003944 0.21 -1.5 92,832 - ABIE53_003944 0.21 -1.8 92,832 - ABIE53_003944 0.21 -0.5 92,832 - ABIE53_003944 0.21 -2.0 92,832 - ABIE53_003944 0.21 -1.8 92,934 + ABIE53_003944 0.32 -4.2 92,935 - ABIE53_003944 0.32 -0.8 92,973 + ABIE53_003944 0.35 -5.0 92,974 - ABIE53_003944 0.36 -1.1 92,974 - ABIE53_003944 0.36 -4.5 93,041 + ABIE53_003944 0.42 -2.3 93,041 + ABIE53_003944 0.42 -2.4 93,172 + ABIE53_003944 0.56 -5.5 93,184 + ABIE53_003944 0.57 +1.5 93,186 + ABIE53_003944 0.57 +1.5 93,361 + ABIE53_003944 0.75 -0.5 93,487 + ABIE53_003944 0.88 -4.0 93,487 + ABIE53_003944 0.88 -3.1 93,487 + ABIE53_003944 0.88 -0.1 93,488 - ABIE53_003944 0.88 -1.2 93,488 - ABIE53_003944 0.88 -1.5 93,589 + +1.5 93,589 + -1.5
Or see this region's nucleotide sequence