Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003565

Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Pyridoxal 1 mM
4,005,431	-				-1.0
4,005,431	-				-0.7
4,005,451	+				-1.9
4,005,451	+				+0.5
4,005,451	+				-1.2
4,005,451	+				-1.0
4,005,451	+				-0.8
4,005,451	+				-0.4
4,005,451	+				-2.5
4,005,451	+				-1.7
4,005,451	+				-2.2
4,005,451	+				+0.5
4,005,451	+				-1.0
4,005,451	+				-2.2
4,005,451	+				-2.0
4,005,451	+				-3.7
4,005,451	+				-0.8
4,005,452	-				-1.6
4,005,452	-				-1.2
4,005,452	-				-1.5
4,005,452	-				+1.0
4,005,452	-				-1.4
4,005,452	-				-2.3
4,005,452	-				-0.3
4,005,452	-				+0.1
4,005,452	-				+0.5
4,005,452	-				-1.8
4,005,452	-				-0.5
4,005,452	-				+0.2
4,005,452	-				+0.1
4,005,452	-				-2.1
4,005,452	-				-1.9
4,005,452	-				+1.1
4,005,452	-				+0.2
4,005,452	-				+0.5
4,005,452	-				-0.4
4,005,452	-				+0.0
4,005,452	-				+0.4
4,005,452	-				+0.5
4,005,609	+				-3.2
4,005,609	+				-1.2
4,005,610	-				-0.4
4,005,610	-				+0.3
4,005,610	-				-0.1
4,005,610	-				-0.0
4,005,610	-				+0.7
4,005,610	-				+1.3
4,005,614	+				+1.1
4,005,614	+				-0.8
4,005,614	+				+0.3
4,005,636	+				+0.0
4,005,636	+				+0.5
4,005,636	+				+0.6
4,005,636	+				+0.3
4,005,637	-				-0.8
4,005,637	-				+0.2
4,005,637	-				+0.3
4,005,637	-				+0.0
4,005,637	-				-0.4
4,005,637	-				-2.3
4,005,637	-				-0.4
4,005,718	+				+0.6
4,005,718	+				-1.4
4,005,718	+				+0.0
4,005,718	+				-0.1
4,005,718	+				+0.4
4,005,718	+				+0.9
4,005,718	+				-2.4
4,005,719	-				-0.1
4,005,719	-				-0.3
4,005,719	-				+0.2
4,005,719	-				+0.8
4,005,719	-				+0.7
4,005,719	-				-0.2
4,005,719	-				+0.1
4,005,719	-				+1.3
4,005,721	+				-0.3
4,005,721	+				+0.4
4,005,721	+				-0.2
4,005,721	+				+0.9
4,005,721	+				-0.3
4,005,721	+				+1.0
4,005,721	+				+0.4
4,005,721	+				+0.6
4,005,721	+				+0.6
4,005,722	-				+1.9
4,005,722	-				+2.5
4,005,722	-				-0.7
4,005,722	-				-0.1
4,005,722	-				-0.4
4,005,722	-				+0.0
4,005,722	-				-0.3
4,005,722	-				-0.0
4,005,722	-				+0.2
4,005,722	-				-1.2
4,005,722	-				-1.4
4,005,722	-				-1.2
4,005,723	-				+0.9
4,005,823	+		ABIE53_003564	0.14	+0.6
4,005,823	+		ABIE53_003564	0.14	-0.2
4,005,929	-		ABIE53_003564	0.30	+1.6
4,006,120	+		ABIE53_003564	0.59	-1.1
4,006,120	+		ABIE53_003564	0.59	-1.0
4,006,120	+		ABIE53_003564	0.59	+1.6
4,006,120	+		ABIE53_003564	0.59	+0.4
4,006,120	+		ABIE53_003564	0.59	+0.8
4,006,120	+		ABIE53_003564	0.59	+0.8
4,006,120	+		ABIE53_003564	0.59	+1.6
4,006,121	-		ABIE53_003564	0.59	-1.0
4,006,121	-		ABIE53_003564	0.59	+0.0
4,006,121	-		ABIE53_003564	0.59	+0.3
4,006,121	-		ABIE53_003564	0.59	+0.2
4,006,121	-		ABIE53_003564	0.59	+0.6
4,006,145	-		ABIE53_003564	0.63	-0.7
4,006,183	+		ABIE53_003564	0.69	+1.2
4,006,184	-		ABIE53_003564	0.69	-0.7
4,006,184	-		ABIE53_003564	0.69	-0.1
4,006,264	+		ABIE53_003564	0.81	-1.0
4,006,264	+		ABIE53_003564	0.81	-0.7
4,006,264	+		ABIE53_003564	0.81	-0.2
4,006,265	-		ABIE53_003564	0.81	+0.3
4,006,265	-		ABIE53_003564	0.81	+2.6
4,006,384	+				-0.4
4,006,384	+				+1.0
4,006,384	+				-0.6
4,006,384	+				+0.0
4,006,384	+				-0.4
4,006,385	-				+0.0
4,006,385	-				-1.0
4,006,385	-				-1.5
4,006,385	-				-2.5
4,006,385	-				-3.1
4,006,385	-				-1.1
4,006,385	-				-0.6
4,006,385	-				-0.4
4,006,608	-		ABIE53_003565	0.38	-1.2
4,006,795	+		ABIE53_003565	0.70	+0.0
4,006,804	+		ABIE53_003565	0.72	-1.6
4,006,804	+		ABIE53_003565	0.72	-1.4
4,006,804	+		ABIE53_003565	0.72	-1.4
4,006,805	-		ABIE53_003565	0.72	-0.4
4,006,805	-		ABIE53_003565	0.72	-2.1
4,006,851	+		ABIE53_003565	0.80	+0.6
4,006,877	+		ABIE53_003565	0.84	-2.9
4,006,877	+		ABIE53_003565	0.84	-2.0
4,006,877	+		ABIE53_003565	0.84	-3.7
4,006,877	+		ABIE53_003565	0.84	-1.8
4,006,916	+				-2.8
4,007,100	+				+0.6
4,007,226	+		ABIE53_003566	0.14	+0.2
4,007,226	+		ABIE53_003566	0.14	+0.6
4,007,394	+		ABIE53_003566	0.51	-0.5
4,007,441	+		ABIE53_003566	0.62	-0.2
4,007,505	+		ABIE53_003566	0.76	-0.6
4,007,505	+		ABIE53_003566	0.76	-0.4
4,007,556	+		ABIE53_003566	0.87	+0.0
4,007,556	+		ABIE53_003566	0.87	+1.2
4,007,556	+		ABIE53_003566	0.87	-0.5
4,007,556	+		ABIE53_003566	0.87	-1.8
4,007,560	+		ABIE53_003566	0.88	-0.7
4,007,560	+		ABIE53_003566	0.88	-0.4
4,007,560	+		ABIE53_003566	0.88	-0.7
4,007,560	+		ABIE53_003566	0.88	+0.2
4,007,560	+		ABIE53_003566	0.88	-0.7
4,007,560	+		ABIE53_003566	0.88	+1.0
4,007,560	+		ABIE53_003566	0.88	-2.1
4,007,560	+		ABIE53_003566	0.88	+1.6
4,007,560	+		ABIE53_003566	0.88	-0.3
4,007,560	+		ABIE53_003566	0.88	-0.7
4,007,560	+		ABIE53_003566	0.88	-1.0
4,007,560	+		ABIE53_003566	0.88	-0.3
4,007,560	+		ABIE53_003566	0.88	-1.4
4,007,560	+		ABIE53_003566	0.88	+0.6
4,007,560	+		ABIE53_003566	0.88	+0.2
4,007,560	+		ABIE53_003566	0.88	-0.7
4,007,560	+		ABIE53_003566	0.88	-1.7
4,007,560	+		ABIE53_003566	0.88	-0.7
4,007,560	+		ABIE53_003566	0.88	-1.1
4,007,562	+		ABIE53_003566	0.88	-0.9
4,007,562	+		ABIE53_003566	0.88	-1.4
4,007,562	+		ABIE53_003566	0.88	-1.0
4,007,562	+		ABIE53_003566	0.88	-1.6
4,007,630	+				-0.1
4,007,630	+				+0.3
4,007,630	+				+0.3