Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002833

Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Pyridoxal 1 mM
3,201,973	+				+1.0
3,201,973	+				-0.8
3,201,973	+				+0.1
3,201,974	-				-0.4
3,201,974	-				-0.3
3,201,974	-				-1.3
3,201,974	-				-1.0
3,201,974	-				+0.5
3,201,974	-				-0.0
3,201,974	-				+1.4
3,201,980	+				-0.2
3,201,981	-				+2.3
3,202,002	+				-1.3
3,202,027	+				-0.0
3,202,027	+				-0.5
3,202,027	+				+0.5
3,202,028	-				-0.5
3,202,028	-				-0.8
3,202,028	-				-1.0
3,202,047	+				+0.6
3,202,047	+				-1.2
3,202,047	+				-0.0
3,202,047	+				-0.2
3,202,047	+				-1.0
3,202,047	+				-0.4
3,202,048	-				-0.5
3,202,048	-				+0.9
3,202,048	-				+1.5
3,202,141	+		ABIE53_002832	0.11	-0.3
3,202,141	+		ABIE53_002832	0.11	-0.6
3,202,287	-		ABIE53_002832	0.28	+1.0
3,202,752	+		ABIE53_002832	0.81	-0.1
3,202,753	-		ABIE53_002832	0.81	+1.5
3,202,774	+		ABIE53_002832	0.84	+1.8
3,202,951	+				-1.1
3,202,951	+				+0.6
3,202,959	+				+0.3
3,202,959	+				+1.9
3,202,974	+				+0.2
3,202,974	+				+1.5
3,202,974	+				-1.8
3,202,974	+				+0.2
3,202,974	+				-0.2
3,202,974	+				-1.2
3,202,975	-				+0.4
3,202,975	-				-0.8
3,202,975	-				-0.8
3,202,975	-				-0.2
3,202,975	-				+1.3
3,203,091	+		ABIE53_002833	0.29	-0.5
3,203,091	+		ABIE53_002833	0.29	-1.5
3,203,091	+		ABIE53_002833	0.29	-0.1
3,203,092	-		ABIE53_002833	0.29	+0.1
3,203,092	-		ABIE53_002833	0.29	-1.9
3,203,092	-		ABIE53_002833	0.29	+0.5
3,203,166	+		ABIE53_002833	0.47	+0.3
3,203,166	+		ABIE53_002833	0.47	-1.0
3,203,166	+		ABIE53_002833	0.47	-1.8
3,203,167	-		ABIE53_002833	0.48	+1.3
3,203,167	-		ABIE53_002833	0.48	-0.6
3,203,167	-		ABIE53_002833	0.48	+0.3
3,203,220	+		ABIE53_002833	0.61	+0.7
3,203,220	+		ABIE53_002833	0.61	+0.6
3,203,221	-		ABIE53_002833	0.61	-0.7
3,203,396	+				+0.4
3,203,396	+				+0.7
3,203,397	-				+1.5
3,203,512	+				+1.5
3,203,513	-				+0.5
3,203,536	-				+0.4
3,203,614	-				-1.7
3,203,614	-				-0.8
3,203,623	+				-1.5
3,203,690	+				+0.5
3,203,707	+				+1.4
3,203,708	-				-1.0
3,203,744	+				-1.3
3,203,745	-				-0.4
3,203,745	-				+0.1
3,203,788	+				+0.5
3,203,789	-				+0.1
3,203,789	-				+0.2
3,203,792	-				+1.1
3,203,792	-				+0.3
3,203,973	+		ABIE53_002834	0.33	+1.1
3,203,973	+		ABIE53_002834	0.33	+1.7
3,203,974	-		ABIE53_002834	0.33	-1.3
3,203,974	-		ABIE53_002834	0.33	-0.3
3,203,974	-		ABIE53_002834	0.33	-1.6
3,203,974	-		ABIE53_002834	0.33	+2.5
3,203,974	-		ABIE53_002834	0.33	+0.4
3,203,974	-		ABIE53_002834	0.33	-1.0
3,204,033	+		ABIE53_002834	0.41	+0.5
3,204,034	-		ABIE53_002834	0.41	+0.7
3,204,053	+		ABIE53_002834	0.44	-0.2
3,204,106	+		ABIE53_002834	0.51	-0.9
3,204,106	+		ABIE53_002834	0.51	-2.5
3,204,106	+		ABIE53_002834	0.51	+0.1
3,204,107	-		ABIE53_002834	0.51	+1.2
3,204,107	-		ABIE53_002834	0.51	+0.1
3,204,110	+		ABIE53_002834	0.52	-0.5
3,204,110	+		ABIE53_002834	0.52	-0.5
3,204,110	+		ABIE53_002834	0.52	-0.2
3,204,110	+		ABIE53_002834	0.52	-2.3
3,204,110	+		ABIE53_002834	0.52	+1.1
3,204,110	+		ABIE53_002834	0.52	+2.1
3,204,111	-		ABIE53_002834	0.52	-0.3
3,204,111	-		ABIE53_002834	0.52	+0.8
3,204,111	-		ABIE53_002834	0.52	+0.2
3,204,127	+		ABIE53_002834	0.54	-0.3
3,204,127	+		ABIE53_002834	0.54	+0.1
3,204,127	+		ABIE53_002834	0.54	-0.6
3,204,127	+		ABIE53_002834	0.54	+0.4
3,204,128	-		ABIE53_002834	0.54	-0.7
3,204,132	+		ABIE53_002834	0.55	-0.6
3,204,133	-		ABIE53_002834	0.55	-1.6
3,204,133	-		ABIE53_002834	0.55	+0.8
3,204,135	+		ABIE53_002834	0.55	-0.5
3,204,135	+		ABIE53_002834	0.55	-1.3
3,204,136	-		ABIE53_002834	0.55	+3.3
3,204,168	+		ABIE53_002834	0.60	-0.0
3,204,168	+		ABIE53_002834	0.60	-0.4
3,204,168	+		ABIE53_002834	0.60	-2.0
3,204,169	-		ABIE53_002834	0.60	-1.3
3,204,169	-		ABIE53_002834	0.60	+0.2
3,204,169	-		ABIE53_002834	0.60	-0.0
3,204,169	-		ABIE53_002834	0.60	-0.2
3,204,169	-		ABIE53_002834	0.60	-1.6
3,204,194	-		ABIE53_002834	0.63	+0.5
3,204,194	-		ABIE53_002834	0.63	+0.3
3,204,201	-		ABIE53_002834	0.64	+2.5
3,204,201	-		ABIE53_002834	0.64	-1.7
3,204,267	+		ABIE53_002834	0.73	+1.0
3,204,267	+		ABIE53_002834	0.73	-0.8
3,204,268	-		ABIE53_002834	0.73	+0.1
3,204,318	+		ABIE53_002834	0.80	-0.7
3,204,318	+		ABIE53_002834	0.80	+0.5
3,204,319	-		ABIE53_002834	0.80	-0.5