Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002069

Experiment: RCH2_defined_glucose_5mM with Pyridoxal 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Pyridoxal 1 mM
2,318,781	+		ABIE53_002068	0.33	+0.7
2,318,782	-		ABIE53_002068	0.33	-0.9
2,318,782	-		ABIE53_002068	0.33	-1.3
2,318,788	-		ABIE53_002068	0.33	-1.3
2,318,788	-		ABIE53_002068	0.33	-0.9
2,318,973	+		ABIE53_002068	0.46	-0.9
2,318,973	+		ABIE53_002068	0.46	-1.7
2,318,973	+		ABIE53_002068	0.46	+0.1
2,318,973	+		ABIE53_002068	0.46	-0.3
2,319,057	+		ABIE53_002068	0.52	-1.9
2,319,057	+		ABIE53_002068	0.52	+1.1
2,319,081	+		ABIE53_002068	0.54	-0.7
2,319,081	+		ABIE53_002068	0.54	+0.4
2,319,081	+		ABIE53_002068	0.54	-0.4
2,319,081	+		ABIE53_002068	0.54	-1.0
2,319,081	+		ABIE53_002068	0.54	-1.3
2,319,081	+		ABIE53_002068	0.54	-2.1
2,319,081	+		ABIE53_002068	0.54	-2.1
2,319,081	+		ABIE53_002068	0.54	+0.7
2,319,081	+		ABIE53_002068	0.54	-1.9
2,319,081	+		ABIE53_002068	0.54	-0.2
2,319,081	+		ABIE53_002068	0.54	-1.1
2,319,081	+		ABIE53_002068	0.54	-0.4
2,319,081	+		ABIE53_002068	0.54	-1.2
2,319,081	+		ABIE53_002068	0.54	-1.3
2,319,082	-		ABIE53_002068	0.54	-0.4
2,319,082	-		ABIE53_002068	0.54	-0.3
2,319,082	-		ABIE53_002068	0.54	+0.6
2,319,082	-		ABIE53_002068	0.54	-3.0
2,319,082	-		ABIE53_002068	0.54	-0.2
2,319,087	+		ABIE53_002068	0.55	-0.2
2,319,087	+		ABIE53_002068	0.55	-0.7
2,319,087	+		ABIE53_002068	0.55	+0.1
2,319,087	+		ABIE53_002068	0.55	-2.1
2,319,087	+		ABIE53_002068	0.55	-0.7
2,319,088	-		ABIE53_002068	0.55	+1.7
2,319,088	-		ABIE53_002068	0.55	-3.1
2,319,088	-		ABIE53_002068	0.55	+0.7
2,319,138	+		ABIE53_002068	0.58	+0.1
2,319,138	+		ABIE53_002068	0.58	+1.7
2,319,138	+		ABIE53_002068	0.58	-1.7
2,319,138	+		ABIE53_002068	0.58	-1.4
2,319,138	+		ABIE53_002068	0.58	-1.7
2,319,138	+		ABIE53_002068	0.58	+1.7
2,319,138	+		ABIE53_002068	0.58	-1.1
2,319,139	-		ABIE53_002068	0.58	-3.2
2,319,139	-		ABIE53_002068	0.58	-1.7
2,319,139	-		ABIE53_002068	0.58	+0.1
2,319,139	-		ABIE53_002068	0.58	+0.7
2,319,139	-		ABIE53_002068	0.58	-1.9
2,319,139	-		ABIE53_002068	0.58	+0.2
2,319,159	+		ABIE53_002068	0.60	-1.6
2,319,296	+		ABIE53_002068	0.70	-0.9
2,319,297	-		ABIE53_002068	0.70	-4.3
2,319,391	-		ABIE53_002068	0.76	-1.1
2,319,615	+				+0.5
2,319,615	+				-0.3
2,319,615	+				+1.7
2,319,615	+				+0.4
2,319,616	-				-2.3
2,319,616	-				-1.3
2,319,616	-				-2.6
2,319,616	-				+1.0
2,319,616	-				-1.5
2,319,616	-				-0.3
2,319,617	+				-3.2
2,319,617	+				-1.5
2,319,617	+				+1.7
2,319,648	+				+1.3
2,319,648	+				-1.0
2,319,649	-				-0.9
2,319,650	+				-0.7
2,319,650	+				-1.1
2,319,650	+				-0.9
2,319,650	+				-3.3
2,319,650	+				-2.2
2,319,650	+				-1.8
2,319,650	+				-1.5
2,319,650	+				-0.5
2,319,650	+				+0.1
2,319,650	+				-0.2
2,319,651	-				-0.1
2,319,651	-				-0.9
2,319,651	-				-1.9
2,319,651	-				-1.7
2,319,651	-				-2.3
2,319,651	-				-0.6
2,319,651	-				-0.9
2,319,743	+				+1.3
2,319,813	+		ABIE53_002069	0.18	+0.4
2,319,814	-		ABIE53_002069	0.18	-0.9
2,319,814	-		ABIE53_002069	0.18	+0.1
2,319,837	-		ABIE53_002069	0.23	+1.2
2,319,837	-		ABIE53_002069	0.23	+2.4
2,319,837	-		ABIE53_002069	0.23	+0.1
2,319,837	-		ABIE53_002069	0.23	+0.5
2,319,837	-		ABIE53_002069	0.23	+1.3
2,319,837	-		ABIE53_002069	0.23	+0.1
2,319,999	+		ABIE53_002069	0.56	+0.4
2,319,999	+		ABIE53_002069	0.56	-0.7
2,319,999	+		ABIE53_002069	0.56	+0.3
2,319,999	+		ABIE53_002069	0.56	+0.3
2,319,999	+		ABIE53_002069	0.56	+1.7
2,320,000	-		ABIE53_002069	0.56	-0.3
2,320,000	-		ABIE53_002069	0.56	-1.9
2,320,040	+		ABIE53_002069	0.64	+0.7
2,320,040	+		ABIE53_002069	0.64	+1.7
2,320,041	-		ABIE53_002069	0.65	-0.5
2,320,070	+		ABIE53_002069	0.71	+0.0
2,320,070	+		ABIE53_002069	0.71	-2.2
2,320,070	+		ABIE53_002069	0.71	+2.4
2,320,071	-		ABIE53_002069	0.71	-0.1
2,320,230	+				-0.3
2,320,230	+				+1.3
2,320,230	+				+0.0
2,320,230	+				-0.2
2,320,230	+				-2.2
2,320,230	+				+0.1
2,320,230	+				-1.1
2,320,231	-				+0.7
2,320,231	-				-0.4
2,320,231	-				+0.7
2,320,231	-				+0.1
2,320,231	-				-0.0
2,320,231	-				-0.2
2,320,231	-				+3.3
2,320,231	-				+2.0
2,320,231	-				+0.1
2,320,231	-				-0.7
2,320,424	+		ABIE53_002070	0.47	-0.1
2,320,424	+		ABIE53_002070	0.47	+0.7
2,320,425	-		ABIE53_002070	0.48	-0.4
2,320,425	-		ABIE53_002070	0.48	+0.9
2,320,425	-		ABIE53_002070	0.48	+0.0
2,320,425	-		ABIE53_002070	0.48	-0.1
2,320,425	-		ABIE53_002070	0.48	-1.7
2,320,425	-		ABIE53_002070	0.48	-0.3
2,320,425	-		ABIE53_002070	0.48	-0.4
2,320,425	-		ABIE53_002070	0.48	+0.5
2,320,425	-		ABIE53_002070	0.48	+0.1
2,320,425	-		ABIE53_002070	0.48	+1.7
2,320,425	-		ABIE53_002070	0.48	+2.7
2,320,425	-		ABIE53_002070	0.48	-1.7
2,320,427	-		ABIE53_002070	0.48	-0.7
2,320,427	-		ABIE53_002070	0.48	-0.6
2,320,565	+		ABIE53_002070	0.79	+0.2
2,320,601	+		ABIE53_002070	0.87	+0.3
2,320,602	-		ABIE53_002070	0.87	-0.3
2,320,602	-		ABIE53_002070	0.87	+0.1
2,320,667	+				-0.3
2,320,668	-				-1.5
2,320,708	+				+0.7
2,320,708	+				+0.9
2,320,709	-				+0.2
2,320,751	+				-0.4
2,320,751	+				+0.0
2,320,752	-				-0.6
2,320,752	-				-1.3
2,320,752	-				-0.3
2,320,807	+				+0.9
2,320,809	+				-0.1
2,320,810	-				+1.4
2,320,810	-				+2.7
2,320,914	+		ABIE53_002071	0.15	-0.7
2,320,914	+		ABIE53_002071	0.15	-0.7
2,320,915	-		ABIE53_002071	0.15	-0.4
2,320,933	+		ABIE53_002071	0.16	+0.6
2,320,933	+		ABIE53_002071	0.16	-0.7
2,320,933	+		ABIE53_002071	0.16	-1.3
2,320,933	+		ABIE53_002071	0.16	-1.8
2,320,933	+		ABIE53_002071	0.16	+0.9
2,320,934	-		ABIE53_002071	0.17	-1.0
2,320,934	-		ABIE53_002071	0.17	+0.1
2,320,934	-		ABIE53_002071	0.17	+0.5
2,320,934	-		ABIE53_002071	0.17	+0.7
2,320,934	-		ABIE53_002071	0.17	-0.2
2,320,934	-		ABIE53_002071	0.17	-1.5
2,320,934	-		ABIE53_002071	0.17	-1.1
2,320,934	-		ABIE53_002071	0.17	+0.7
2,320,934	-		ABIE53_002071	0.17	-2.0
2,321,110	+		ABIE53_002071	0.31	-0.6
2,321,111	-		ABIE53_002071	0.31	-0.4
2,321,111	-		ABIE53_002071	0.31	-0.5
2,321,208	+		ABIE53_002071	0.40	+0.3
2,321,208	+		ABIE53_002071	0.40	-1.3
2,321,209	-		ABIE53_002071	0.40	-1.1
2,321,209	-		ABIE53_002071	0.40	-0.9