Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0067

Experiment: MoYLS4 with Aluminum Chloride 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0065 and DVU0066 are separated by 214 nucleotidesDVU0066 and DVU0067 are separated by 170 nucleotidesDVU0067 and DVU0068 are separated by 376 nucleotides DVU0065: DVU0065 - hypothetical protein (TIGR), at 77,110 to 77,907 DVU0065 DVU0066: DVU0066 - cytidine/deoxycytidylate deaminase domain protein (TIGR), at 78,122 to 78,691 DVU0066 DVU0067: DVU0067 - hypothetical protein (TIGR), at 78,862 to 79,170 DVU0067 DVU0068: DVU0068 - conserved hypothetical protein (TIGR), at 79,547 to 81,082 DVU0068 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 77.918 kb on - strandat 77.936 kb on - strandat 77.961 kb on + strandat 77.969 kb on - strandat 77.976 kb on + strandat 77.984 kb on - strandat 78.000 kb on + strandat 78.033 kb on - strandat 78.116 kb on - strandat 78.116 kb on - strandat 78.223 kb on - strand, within DVU0066at 78.266 kb on + strand, within DVU0066at 78.370 kb on + strand, within DVU0066at 78.407 kb on + strand, within DVU0066at 78.415 kb on - strand, within DVU0066at 78.442 kb on - strand, within DVU0066at 78.442 kb on - strand, within DVU0066at 78.442 kb on - strand, within DVU0066at 78.470 kb on + strand, within DVU0066at 78.470 kb on + strand, within DVU0066at 78.470 kb on + strand, within DVU0066at 78.509 kb on + strand, within DVU0066at 78.509 kb on + strand, within DVU0066at 78.533 kb on + strand, within DVU0066at 78.573 kb on - strand, within DVU0066at 78.575 kb on + strand, within DVU0066at 78.646 kb on + strandat 78.651 kb on + strandat 78.654 kb on - strandat 78.886 kb on + strandat 78.894 kb on - strand, within DVU0067at 78.894 kb on - strand, within DVU0067at 78.964 kb on + strand, within DVU0067at 78.980 kb on - strand, within DVU0067at 78.987 kb on - strand, within DVU0067at 79.009 kb on - strand, within DVU0067at 79.100 kb on - strand, within DVU0067at 79.117 kb on - strand, within DVU0067at 79.134 kb on - strand, within DVU0067at 79.211 kb on + strandat 79.288 kb on + strandat 79.353 kb on + strandat 79.360 kb on - strandat 79.394 kb on - strandat 79.533 kb on - strandat 79.591 kb on - strandat 79.606 kb on - strandat 79.615 kb on + strandat 79.615 kb on + strandat 79.615 kb on + strandat 79.615 kb on + strandat 79.623 kb on - strandat 79.623 kb on - strandat 79.677 kb on + strandat 79.685 kb on - strandat 79.707 kb on + strand, within DVU0068at 79.715 kb on + strand, within DVU0068at 79.715 kb on + strand, within DVU0068at 79.725 kb on - strand, within DVU0068at 79.761 kb on - strand, within DVU0068at 79.787 kb on + strand, within DVU0068at 79.787 kb on + strand, within DVU0068at 79.787 kb on + strand, within DVU0068at 79.822 kb on - strand, within DVU0068at 79.856 kb on - strand, within DVU0068at 79.866 kb on - strand, within DVU0068at 79.906 kb on - strand, within DVU0068at 79.941 kb on - strand, within DVU0068at 79.958 kb on + strand, within DVU0068at 79.966 kb on - strand, within DVU0068at 80.026 kb on + strand, within DVU0068at 80.026 kb on + strand, within DVU0068at 80.026 kb on + strand, within DVU0068at 80.034 kb on - strand, within DVU0068at 80.034 kb on - strand, within DVU0068at 80.078 kb on + strand, within DVU0068at 80.100 kb on - strand, within DVU0068at 80.103 kb on + strand, within DVU0068at 80.129 kb on + strand, within DVU0068

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum Chloride 10mM
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77,918 - -0.3
77,936 - -1.2
77,961 + -0.3
77,969 - -0.1
77,976 + +0.5
77,984 - -0.7
78,000 + +0.5
78,033 - -0.5
78,116 - +0.2
78,116 - -2.1
78,223 - DVU0066 0.18 -0.5
78,266 + DVU0066 0.25 -0.1
78,370 + DVU0066 0.44 -0.5
78,407 + DVU0066 0.50 -0.0
78,415 - DVU0066 0.51 +1.6
78,442 - DVU0066 0.56 +0.1
78,442 - DVU0066 0.56 -0.2
78,442 - DVU0066 0.56 -0.3
78,470 + DVU0066 0.61 +1.1
78,470 + DVU0066 0.61 -1.1
78,470 + DVU0066 0.61 -0.4
78,509 + DVU0066 0.68 -0.7
78,509 + DVU0066 0.68 -0.0
78,533 + DVU0066 0.72 -2.5
78,573 - DVU0066 0.79 -1.1
78,575 + DVU0066 0.79 -0.4
78,646 + +0.1
78,651 + -0.3
78,654 - +0.2
78,886 + +0.1
78,894 - DVU0067 0.10 -0.5
78,894 - DVU0067 0.10 -0.2
78,964 + DVU0067 0.33 -1.7
78,980 - DVU0067 0.38 -0.1
78,987 - DVU0067 0.40 +1.1
79,009 - DVU0067 0.48 -0.5
79,100 - DVU0067 0.77 -1.2
79,117 - DVU0067 0.83 -1.1
79,134 - DVU0067 0.88 +0.5
79,211 + +0.6
79,288 + +0.1
79,353 + -1.3
79,360 - -0.9
79,394 - +0.3
79,533 - +1.1
79,591 - +2.1
79,606 - -0.0
79,615 + -0.3
79,615 + -0.9
79,615 + -0.1
79,615 + +0.1
79,623 - -0.5
79,623 - +0.1
79,677 + +1.8
79,685 - -1.1
79,707 + DVU0068 0.10 -0.3
79,715 + DVU0068 0.11 +0.0
79,715 + DVU0068 0.11 -0.0
79,725 - DVU0068 0.12 -0.1
79,761 - DVU0068 0.14 -0.9
79,787 + DVU0068 0.16 -0.9
79,787 + DVU0068 0.16 -0.2
79,787 + DVU0068 0.16 -0.9
79,822 - DVU0068 0.18 +0.3
79,856 - DVU0068 0.20 -0.7
79,866 - DVU0068 0.21 -0.4
79,906 - DVU0068 0.23 -0.6
79,941 - DVU0068 0.26 -0.4
79,958 + DVU0068 0.27 +0.3
79,966 - DVU0068 0.27 -0.5
80,026 + DVU0068 0.31 -0.3
80,026 + DVU0068 0.31 -0.3
80,026 + DVU0068 0.31 -0.1
80,034 - DVU0068 0.32 +0.1
80,034 - DVU0068 0.32 -0.4
80,078 + DVU0068 0.35 -2.8
80,100 - DVU0068 0.36 -0.3
80,103 + DVU0068 0.36 -0.0
80,129 + DVU0068 0.38 +0.5

Or see this region's nucleotide sequence