Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2183

Experiment: MoYLS4 with Aluminum Chloride 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2181 and DVU2183 are separated by 389 nucleotidesDVU2183 and DVU2184 are separated by 34 nucleotidesDVU2184 and DVU2185 are separated by 3 nucleotides DVU2181: DVU2181 - antirepressor, putative (TIGR), at 2,279,617 to 2,280,495 DVU2181 DVU2183: DVU2183 - hypothetical protein (TIGR), at 2,280,885 to 2,281,616 DVU2183 DVU2184: DVU2184 - DNA-binding domain, excisionase family (TIGR), at 2,281,651 to 2,281,869 DVU2184 DVU2185: DVU2185 - terminase, large subunit, putative (TIGR), at 2,281,873 to 2,283,798 DVU2185 Position (kb) 2280 2281 2282Strain fitness (log2 ratio) -2 -1 0 1 2at 2279.920 kb on + strand, within DVU2181at 2279.933 kb on + strand, within DVU2181at 2279.940 kb on - strand, within DVU2181at 2280.001 kb on + strand, within DVU2181at 2280.001 kb on + strand, within DVU2181at 2280.057 kb on - strand, within DVU2181at 2280.116 kb on - strand, within DVU2181at 2280.127 kb on + strand, within DVU2181at 2280.195 kb on - strand, within DVU2181at 2280.337 kb on - strand, within DVU2181at 2280.342 kb on - strand, within DVU2181at 2280.352 kb on + strand, within DVU2181at 2280.400 kb on - strand, within DVU2181at 2280.682 kb on - strandat 2281.028 kb on - strand, within DVU2183at 2281.665 kb on - strandat 2281.713 kb on + strand, within DVU2184at 2281.805 kb on + strand, within DVU2184at 2281.818 kb on - strand, within DVU2184at 2281.823 kb on - strand, within DVU2184at 2281.823 kb on - strand, within DVU2184at 2281.828 kb on - strand, within DVU2184at 2281.865 kb on + strandat 2281.879 kb on + strandat 2281.915 kb on + strandat 2281.967 kb on - strandat 2282.026 kb on - strandat 2282.046 kb on - strandat 2282.059 kb on + strandat 2282.153 kb on + strand, within DVU2185at 2282.161 kb on - strand, within DVU2185at 2282.185 kb on - strand, within DVU2185at 2282.248 kb on + strand, within DVU2185at 2282.256 kb on - strand, within DVU2185at 2282.289 kb on + strand, within DVU2185at 2282.332 kb on + strand, within DVU2185at 2282.382 kb on + strand, within DVU2185at 2282.387 kb on + strand, within DVU2185at 2282.395 kb on - strand, within DVU2185at 2282.395 kb on - strand, within DVU2185at 2282.401 kb on - strand, within DVU2185at 2282.418 kb on - strand, within DVU2185at 2282.420 kb on + strand, within DVU2185at 2282.435 kb on + strand, within DVU2185at 2282.491 kb on + strand, within DVU2185at 2282.504 kb on + strand, within DVU2185at 2282.546 kb on + strand, within DVU2185

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum Chloride 10mM
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2,279,920 + DVU2181 0.34 +0.1
2,279,933 + DVU2181 0.36 -0.1
2,279,940 - DVU2181 0.37 +0.4
2,280,001 + DVU2181 0.44 +0.1
2,280,001 + DVU2181 0.44 +0.2
2,280,057 - DVU2181 0.50 -0.3
2,280,116 - DVU2181 0.57 -0.5
2,280,127 + DVU2181 0.58 -0.3
2,280,195 - DVU2181 0.66 -0.1
2,280,337 - DVU2181 0.82 -0.1
2,280,342 - DVU2181 0.82 +0.7
2,280,352 + DVU2181 0.84 -0.6
2,280,400 - DVU2181 0.89 -2.0
2,280,682 - -0.1
2,281,028 - DVU2183 0.20 -0.6
2,281,665 - +0.3
2,281,713 + DVU2184 0.28 +0.5
2,281,805 + DVU2184 0.70 +0.6
2,281,818 - DVU2184 0.76 -0.4
2,281,823 - DVU2184 0.79 -1.1
2,281,823 - DVU2184 0.79 -0.5
2,281,828 - DVU2184 0.81 +0.2
2,281,865 + -0.1
2,281,879 + -0.8
2,281,915 + +0.3
2,281,967 - +0.0
2,282,026 - -0.8
2,282,046 - -0.4
2,282,059 + -0.5
2,282,153 + DVU2185 0.15 -2.0
2,282,161 - DVU2185 0.15 +1.9
2,282,185 - DVU2185 0.16 -0.7
2,282,248 + DVU2185 0.19 +0.3
2,282,256 - DVU2185 0.20 -0.2
2,282,289 + DVU2185 0.22 +0.2
2,282,332 + DVU2185 0.24 +0.0
2,282,382 + DVU2185 0.26 -0.1
2,282,387 + DVU2185 0.27 +0.0
2,282,395 - DVU2185 0.27 -0.5
2,282,395 - DVU2185 0.27 -1.2
2,282,401 - DVU2185 0.27 -0.6
2,282,418 - DVU2185 0.28 -0.3
2,282,420 + DVU2185 0.28 -0.6
2,282,435 + DVU2185 0.29 +0.5
2,282,491 + DVU2185 0.32 +0.5
2,282,504 + DVU2185 0.33 -0.5
2,282,546 + DVU2185 0.35 -0.0

Or see this region's nucleotide sequence