Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2051

Experiment: MoYLS4 with Aluminum Chloride 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2049 and DVU2051 are separated by 791 nucleotidesDVU2051 and tRNA-Met are separated by 220 nucleotidestRNA-Met and dmt are separated by 102 nucleotides DVU2049: DVU2049 - transposase OrfA, IS3 family, degenerate (TIGR), at 2,126,385 to 2,126,851 DVU2049 DVU2051: DVU2051 - hypothetical protein (TIGR), at 2,127,643 to 2,128,941 DVU2051 DVU_tRNA-Met-4: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 2,129,162 to 2,129,238 tRNA-Met DVU2052: dmt - glycosyl transferase, group 2 family protein (TIGR), at 2,129,341 to 2,130,063 dmt Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -2 -1 0 1at 2126.645 kb on + strand, within DVU2049at 2126.683 kb on - strand, within DVU2049at 2126.691 kb on + strand, within DVU2049at 2126.698 kb on + strand, within DVU2049at 2126.922 kb on - strandat 2126.965 kb on + strandat 2126.973 kb on - strandat 2127.121 kb on + strandat 2127.140 kb on + strandat 2127.140 kb on + strandat 2127.148 kb on - strandat 2127.150 kb on + strandat 2127.152 kb on + strandat 2127.199 kb on + strandat 2127.200 kb on + strandat 2127.200 kb on + strandat 2127.208 kb on - strandat 2127.208 kb on - strandat 2127.221 kb on + strandat 2127.410 kb on - strandat 2127.555 kb on - strandat 2128.493 kb on + strand, within DVU2051at 2128.500 kb on + strand, within DVU2051at 2128.739 kb on + strand, within DVU2051at 2128.824 kb on - strandat 2129.077 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum Chloride 10mM
remove
2,126,645 + DVU2049 0.56 -0.4
2,126,683 - DVU2049 0.64 -0.0
2,126,691 + DVU2049 0.66 +0.2
2,126,698 + DVU2049 0.67 +0.5
2,126,922 - -0.4
2,126,965 + +0.7
2,126,973 - -0.6
2,127,121 + -0.2
2,127,140 + -0.2
2,127,140 + -0.5
2,127,148 - -0.6
2,127,150 + +0.2
2,127,152 + -0.8
2,127,199 + -0.1
2,127,200 + -0.4
2,127,200 + -0.2
2,127,208 - +0.3
2,127,208 - -0.5
2,127,221 + -2.1
2,127,410 - +0.2
2,127,555 - -0.7
2,128,493 + DVU2051 0.65 -0.6
2,128,500 + DVU2051 0.66 -1.0
2,128,739 + DVU2051 0.84 -0.3
2,128,824 - -0.3
2,129,077 + -1.7

Or see this region's nucleotide sequence