Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20460

Experiment: Recovery broth with Lacidipine 0.4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Lacidipine 0.4 mM
2,415,590	-		BBR_RS20455	0.14	-0.0
2,415,635	-		BBR_RS20455	0.18	+0.4
2,415,687	-		BBR_RS20455	0.23	+1.4
2,415,695	+		BBR_RS20455	0.24	+0.6
2,415,708	+		BBR_RS20455	0.25	+0.2
2,415,712	+		BBR_RS20455	0.25	-1.9
2,415,740	+		BBR_RS20455	0.28	-1.2
2,415,740	+		BBR_RS20455	0.28	-0.3
2,415,748	-		BBR_RS20455	0.29	-1.5
2,415,758	-		BBR_RS20455	0.30	-1.0
2,415,768	-		BBR_RS20455	0.31	-1.0
2,415,861	+		BBR_RS20455	0.40	+0.4
2,415,861	-		BBR_RS20455	0.40	+0.4
2,415,871	+		BBR_RS20455	0.41	+0.8
2,415,920	-		BBR_RS20455	0.46	-0.6
2,415,965	-		BBR_RS20455	0.50	-2.4
2,416,010	-		BBR_RS20455	0.55	-1.5
2,416,015	-		BBR_RS20455	0.55	+1.1
2,416,028	-		BBR_RS20455	0.56	-2.1
2,416,056	-		BBR_RS20455	0.59	-1.3
2,416,058	+		BBR_RS20455	0.59	+0.1
2,416,072	+		BBR_RS20455	0.61	-0.8
2,416,072	+		BBR_RS20455	0.61	+1.1
2,416,080	-		BBR_RS20455	0.62	-0.0
2,416,105	+		BBR_RS20455	0.64	-0.5
2,416,128	-		BBR_RS20455	0.66	-0.2
2,416,141	-		BBR_RS20455	0.68	-0.1
2,416,157	-		BBR_RS20455	0.69	+0.3
2,416,191	+		BBR_RS20455	0.72	-0.6
2,416,235	-		BBR_RS20455	0.77	-1.7
2,416,267	+		BBR_RS20455	0.80	-1.2
2,416,271	-		BBR_RS20455	0.80	-1.2
2,416,272	+		BBR_RS20455	0.80	+0.5
2,416,275	-		BBR_RS20455	0.81	-0.1
2,416,297	+		BBR_RS20455	0.83	-1.3
2,416,302	+		BBR_RS20455	0.83	-0.1
2,416,305	-		BBR_RS20455	0.84	-0.9
2,416,305	-		BBR_RS20455	0.84	+0.2
2,416,340	+		BBR_RS20455	0.87	-0.3
2,416,340	+		BBR_RS20455	0.87	-0.6
2,416,344	-		BBR_RS20455	0.87	+0.4
2,416,346	-		BBR_RS20455	0.88	-0.5
2,416,364	-		BBR_RS20455	0.89	-0.5
2,416,401	-				+0.6
2,416,428	-				+1.2
2,416,428	-				-1.3
2,416,428	-				+0.6
2,416,439	+				-0.2
2,416,440	+				+0.6
2,416,446	+				-1.1
2,416,453	+				-0.2
2,416,456	+				+0.5
2,416,456	+				-2.4
2,416,456	+				+0.0
2,416,457	+				-1.0
2,416,461	-				+0.5
2,416,464	+				+0.4
2,416,478	+				+0.1
2,416,478	-				+0.5
2,416,480	+				-0.0
2,416,480	+				-0.1
2,416,488	-				+0.4
2,416,488	-				+0.7
2,416,495	+				-0.1
2,416,497	+				+0.3
2,416,497	+				+0.5
2,416,497	+				-0.3
2,416,497	+				-0.1
2,416,497	+				+0.4
2,416,498	-				-0.8
2,416,505	+				-0.8
2,416,505	-				+0.2
2,416,505	-				-0.2
2,416,505	-				-1.0
2,416,505	-				-0.4
2,416,505	-				-1.0
2,416,505	-				+0.3
2,416,505	-				+0.5
2,416,505	-				+0.3
2,416,505	-				-0.1
2,416,505	-				+0.0
2,416,508	-				-0.4
2,416,510	+				+0.3
2,416,513	-				+0.1
2,416,513	-				+0.4
2,416,518	-				+0.5
2,416,518	-				-0.4
2,416,523	-				-0.6
2,416,523	-				-0.3
2,416,523	-				+0.5
2,416,523	-				-0.6
2,416,523	-				-0.5
2,416,524	+				+0.1
2,416,537	+				-0.1
2,416,542	+				+0.3
2,416,542	+				-0.1
2,416,542	-				-0.8
2,416,542	-				+0.1
2,416,542	-				-2.8
2,416,550	-				+0.3
2,416,550	-				+0.0
2,416,550	-				-0.4
2,416,550	-				+0.2
2,416,552	+				-0.6
2,416,556	+				-0.2
2,416,561	+				+0.6
2,416,561	+				-0.4
2,416,564	-				-1.5
2,416,564	-				+0.1
2,416,570	+				-0.1
2,416,578	-				-0.5
2,416,578	-				+0.6
2,416,578	-				-0.6
2,416,578	-				+0.0
2,416,593	-				-0.5
2,416,597	+				-0.9
2,416,605	-				+1.4
2,416,607	+				+0.5
2,416,615	-				-1.6
2,416,615	-				-0.3
2,416,615	-				-0.3
2,416,625	-				-0.6
2,416,625	-				-0.1
2,416,707	-				-0.8
2,416,743	+		BBR_RS20460	0.12	+0.7
2,416,825	-		BBR_RS20460	0.19	-0.5
2,416,898	+		BBR_RS20460	0.24	-0.4
2,416,911	-		BBR_RS20460	0.26	-1.3
2,416,968	-		BBR_RS20460	0.30	-1.3
2,416,978	-		BBR_RS20460	0.31	+0.2
2,417,082	+		BBR_RS20460	0.39	+1.1
2,417,112	-		BBR_RS20460	0.41	-1.7
2,417,146	+		BBR_RS20460	0.44	+0.3
2,417,187	-		BBR_RS20460	0.47	-0.0
2,417,216	+		BBR_RS20460	0.50	+0.2
2,417,236	+		BBR_RS20460	0.51	-0.1
2,417,304	-		BBR_RS20460	0.57	+0.1
2,417,309	-		BBR_RS20460	0.57	+0.1
2,417,311	-		BBR_RS20460	0.57	+0.1
2,417,361	-		BBR_RS20460	0.61	-0.9
2,417,363	+		BBR_RS20460	0.61	+2.5
2,417,479	-		BBR_RS20460	0.70	-2.1
2,417,497	-		BBR_RS20460	0.72	-1.5
2,417,530	-		BBR_RS20460	0.74	-1.4
2,417,723	-		BBR_RS20460	0.90	-0.6
2,417,738	+				-2.2
2,417,801	-				-1.2
2,417,838	-				-1.1
2,417,838	-				-0.2
2,417,860	-				-0.3
2,417,867	+				-0.6
2,417,875	+				+0.4
2,417,875	-				+0.2
2,417,875	-				-1.8
2,417,875	-				+0.9
2,417,883	-				-1.6
2,417,883	-				-0.6
2,417,930	-				-0.3
2,417,944	-				-1.5
2,417,946	-				-1.5
2,418,024	-		BBR_RS20465	0.18	+1.1
2,418,039	-		BBR_RS20465	0.19	-0.2
2,418,039	-		BBR_RS20465	0.19	-0.4
2,418,054	-		BBR_RS20465	0.21	-1.2
2,418,054	-		BBR_RS20465	0.21	+0.8
2,418,065	+		BBR_RS20465	0.22	-0.1
2,418,065	-		BBR_RS20465	0.22	-0.6
2,418,066	-		BBR_RS20465	0.22	-1.0
2,418,072	+		BBR_RS20465	0.23	-0.8
2,418,078	-		BBR_RS20465	0.23	+0.3
2,418,078	-		BBR_RS20465	0.23	-1.9
2,418,078	-		BBR_RS20465	0.23	-1.4
2,418,080	+		BBR_RS20465	0.23	-0.9
2,418,080	-		BBR_RS20465	0.23	+2.4
2,418,080	-		BBR_RS20465	0.23	-0.7
2,418,080	-		BBR_RS20465	0.23	-1.7
2,418,080	-		BBR_RS20465	0.23	+0.6
2,418,080	-		BBR_RS20465	0.23	-0.5
2,418,080	-		BBR_RS20465	0.23	-2.4
2,418,080	-		BBR_RS20465	0.23	+0.6
2,418,080	-		BBR_RS20465	0.23	-0.1
2,418,080	-		BBR_RS20465	0.23	-1.5
2,418,088	-		BBR_RS20465	0.24	-1.1
2,418,088	-		BBR_RS20465	0.24	-0.5
2,418,088	-		BBR_RS20465	0.24	-0.1
2,418,104	-		BBR_RS20465	0.26	-0.9
2,418,115	-		BBR_RS20465	0.27	-1.2
2,418,154	-		BBR_RS20465	0.31	-1.6
2,418,154	-		BBR_RS20465	0.31	+1.1
2,418,160	-		BBR_RS20465	0.32	+0.1
2,418,160	-		BBR_RS20465	0.32	-1.3
2,418,168	-		BBR_RS20465	0.33	-0.9
2,418,168	-		BBR_RS20465	0.33	-0.6
2,418,181	-		BBR_RS20465	0.34	-0.4
2,418,182	-		BBR_RS20465	0.34	-2.0
2,418,191	-		BBR_RS20465	0.35	-1.4
2,418,272	-		BBR_RS20465	0.43	-1.3
2,418,294	-		BBR_RS20465	0.46	+1.8
2,418,307	-		BBR_RS20465	0.47	-1.2
2,418,309	-		BBR_RS20465	0.47	-1.4
2,418,377	+		BBR_RS20465	0.54	-0.4
2,418,447	-		BBR_RS20465	0.61	+0.6
2,418,447	-		BBR_RS20465	0.61	-1.1
2,418,547	-		BBR_RS20465	0.72	-1.7
2,418,556	-		BBR_RS20465	0.73	-2.0
2,418,579	-		BBR_RS20465	0.75	+1.5
2,418,579	-		BBR_RS20465	0.75	-0.7
2,418,584	-		BBR_RS20465	0.75	+0.1
2,418,607	-		BBR_RS20465	0.78	-1.8
2,418,624	-		BBR_RS20465	0.80	-1.7
2,418,657	+		BBR_RS20465	0.83	-0.3
2,418,659	-		BBR_RS20465	0.83	-2.2
2,418,659	-		BBR_RS20465	0.83	+0.5
2,418,664	+		BBR_RS20465	0.84	-1.4
2,418,672	-		BBR_RS20465	0.85	-0.2
2,418,727	+				-0.1
2,418,727	+				+0.6
2,418,727	+				-1.0
2,418,735	-				-2.0
2,418,735	-				-0.1
2,418,745	-				-1.6
2,418,745	-				-2.5
2,418,798	+				-0.2
2,418,817	+				+2.1
2,418,822	-				-1.4
2,418,828	+				+0.0
2,418,836	-				-1.3
2,418,844	+				-1.0
2,418,846	-				-0.8
2,418,850	+				+0.3
2,418,852	+				+0.8
2,418,852	+				-0.4
2,418,852	-				-0.7
2,418,852	-				-0.1