Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20455

Experiment: Recovery broth with Lacidipine 0.4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Lacidipine 0.4 mM
2,414,459	+		BBR_RS20450	0.79	-0.7
2,414,465	+		BBR_RS20450	0.79	-0.3
2,414,465	+		BBR_RS20450	0.79	-1.9
2,414,465	+		BBR_RS20450	0.79	-1.1
2,414,465	-		BBR_RS20450	0.79	-0.3
2,414,467	-		BBR_RS20450	0.79	-0.1
2,414,479	+		BBR_RS20450	0.80	+0.7
2,414,504	+		BBR_RS20450	0.80	-0.6
2,414,509	+		BBR_RS20450	0.80	+1.8
2,414,510	+		BBR_RS20450	0.80	-1.5
2,414,517	-		BBR_RS20450	0.81	-0.1
2,414,517	-		BBR_RS20450	0.81	-0.1
2,414,519	+		BBR_RS20450	0.81	-0.1
2,414,529	+		BBR_RS20450	0.81	-0.9
2,414,542	+		BBR_RS20450	0.81	+0.1
2,414,546	-		BBR_RS20450	0.81	+1.4
2,414,553	+		BBR_RS20450	0.82	-0.8
2,414,563	+		BBR_RS20450	0.82	-0.5
2,414,563	+		BBR_RS20450	0.82	+0.2
2,414,563	+		BBR_RS20450	0.82	-0.6
2,414,563	+		BBR_RS20450	0.82	-0.5
2,414,563	+		BBR_RS20450	0.82	+0.2
2,414,571	-		BBR_RS20450	0.82	-0.8
2,414,573	+		BBR_RS20450	0.82	-0.2
2,414,582	-		BBR_RS20450	0.82	+0.2
2,414,604	+		BBR_RS20450	0.83	-0.1
2,414,612	+		BBR_RS20450	0.83	+1.6
2,414,612	-		BBR_RS20450	0.83	-0.2
2,414,612	-		BBR_RS20450	0.83	-0.7
2,414,612	-		BBR_RS20450	0.83	-1.1
2,414,613	-		BBR_RS20450	0.83	-0.8
2,414,619	-		BBR_RS20450	0.83	-0.5
2,414,639	-		BBR_RS20450	0.84	+2.8
2,414,656	+		BBR_RS20450	0.84	+1.2
2,414,656	+		BBR_RS20450	0.84	-2.9
2,414,656	+		BBR_RS20450	0.84	+0.8
2,414,656	+		BBR_RS20450	0.84	-1.1
2,414,656	+		BBR_RS20450	0.84	-0.1
2,414,656	+		BBR_RS20450	0.84	-0.4
2,414,656	+		BBR_RS20450	0.84	-0.5
2,414,656	+		BBR_RS20450	0.84	+0.6
2,414,656	+		BBR_RS20450	0.84	-0.7
2,414,656	+		BBR_RS20450	0.84	-0.8
2,414,664	-		BBR_RS20450	0.84	-0.6
2,414,664	-		BBR_RS20450	0.84	-1.8
2,414,664	-		BBR_RS20450	0.84	-1.5
2,414,664	-		BBR_RS20450	0.84	-0.8
2,414,664	-		BBR_RS20450	0.84	-0.1
2,414,687	+		BBR_RS20450	0.85	+0.4
2,414,693	-		BBR_RS20450	0.85	-0.3
2,414,695	-		BBR_RS20450	0.85	+0.2
2,414,695	-		BBR_RS20450	0.85	-0.3
2,414,695	-		BBR_RS20450	0.85	-1.3
2,414,696	-		BBR_RS20450	0.85	-1.1
2,414,697	-		BBR_RS20450	0.85	+0.1
2,414,705	-		BBR_RS20450	0.86	-1.8
2,414,715	-		BBR_RS20450	0.86	-1.5
2,414,723	-		BBR_RS20450	0.86	-1.4
2,414,772	-		BBR_RS20450	0.87	+0.1
2,414,772	-		BBR_RS20450	0.87	-0.3
2,414,777	+		BBR_RS20450	0.87	+0.7
2,414,780	-		BBR_RS20450	0.88	-0.2
2,414,783	+		BBR_RS20450	0.88	+0.7
2,414,785	-		BBR_RS20450	0.88	+0.4
2,414,788	-		BBR_RS20450	0.88	-0.9
2,414,789	+		BBR_RS20450	0.88	+0.5
2,414,793	+		BBR_RS20450	0.88	-0.4
2,414,805	+		BBR_RS20450	0.88	+0.6
2,414,819	+		BBR_RS20450	0.89	-0.2
2,414,820	-		BBR_RS20450	0.89	-0.1
2,414,828	-		BBR_RS20450	0.89	+0.9
2,414,832	-		BBR_RS20450	0.89	+0.2
2,414,832	-		BBR_RS20450	0.89	-0.3
2,414,836	+		BBR_RS20450	0.89	-0.3
2,414,842	+		BBR_RS20450	0.89	+0.6
2,414,849	+		BBR_RS20450	0.89	-0.2
2,414,850	-		BBR_RS20450	0.89	-0.6
2,414,860	+		BBR_RS20450	0.90	-0.1
2,414,862	+		BBR_RS20450	0.90	+0.2
2,414,868	-		BBR_RS20450	0.90	+0.4
2,414,868	-		BBR_RS20450	0.90	-0.6
2,414,878	+				+0.2
2,414,878	+				-0.1
2,414,878	+				-0.6
2,414,885	-				+0.7
2,414,886	-				+0.6
2,414,886	-				-1.2
2,414,886	-				+0.4
2,414,886	-				-0.0
2,414,886	-				+0.0
2,414,887	+				+0.0
2,414,887	+				+0.5
2,414,887	+				-0.1
2,414,895	-				+1.2
2,414,895	-				+0.7
2,414,895	-				-1.0
2,414,897	+				+0.4
2,414,899	+				-0.0
2,414,899	+				+0.4
2,414,906	-				+0.5
2,414,906	-				+1.1
2,414,907	-				+0.6
2,414,917	+				+0.4
2,414,925	-				+0.3
2,414,928	+				-0.2
2,414,928	+				+0.8
2,414,936	-				+0.0
2,414,936	-				-0.1
2,414,936	-				+0.7
2,414,936	-				-0.5
2,414,936	-				+0.3
2,414,936	-				+0.7
2,414,947	-				-0.8
2,414,950	+				+0.1
2,414,956	+				-2.1
2,414,956	+				+0.2
2,414,958	-				-0.2
2,414,964	+				-0.5
2,414,964	-				+0.7
2,414,964	-				+0.1
2,414,964	-				+0.4
2,414,964	-				-0.1
2,414,969	+				-0.5
2,414,985	+				+0.8
2,414,986	-				+0.3
2,414,987	-				-0.5
2,414,991	-				+0.2
2,414,991	-				+0.5
2,414,991	-				+0.1
2,414,992	+				-0.3
2,414,992	+				+0.2
2,414,992	+				+0.4
2,414,993	-				-0.3
2,414,996	+				+0.5
2,414,996	-				-0.1
2,414,997	+				-0.6
2,414,997	+				+0.4
2,414,997	+				+1.1
2,414,997	+				+0.3
2,414,997	+				+0.6
2,415,000	-				+0.1
2,415,000	-				-0.3
2,415,004	-				-0.3
2,415,005	-				-0.2
2,415,005	-				+1.6
2,415,007	+				+0.4
2,415,007	+				-0.7
2,415,007	+				+0.8
2,415,009	+				+0.3
2,415,014	+				+0.4
2,415,014	+				+0.8
2,415,015	-				-0.5
2,415,015	-				-0.7
2,415,016	+				+0.1
2,415,016	+				+0.9
2,415,019	+				-0.1
2,415,019	+				-0.0
2,415,019	-				-0.7
2,415,022	-				-0.2
2,415,022	-				+0.4
2,415,022	-				+0.4
2,415,022	-				-0.0
2,415,022	-				-0.5
2,415,027	-				+1.2
2,415,047	+				+0.5
2,415,053	-				+0.4
2,415,058	-				+0.3
2,415,059	+				-0.5
2,415,059	+				+0.1
2,415,059	+				+0.2
2,415,059	+				-0.2
2,415,059	+				-0.5
2,415,059	+				+0.4
2,415,059	+				+0.1
2,415,059	+				+0.1
2,415,059	+				-1.1
2,415,059	+				-0.9
2,415,059	+				-0.4
2,415,059	+				-0.1
2,415,059	+				-0.0
2,415,059	+				+0.7
2,415,059	+				+0.2
2,415,059	+				+0.4
2,415,059	+				-0.0
2,415,059	+				-0.0
2,415,059	+				+0.2
2,415,066	-				+0.8
2,415,067	-				+1.1
2,415,067	-				+0.0
2,415,067	-				+1.0
2,415,067	-				+0.1
2,415,067	-				+0.4
2,415,067	-				-0.2
2,415,067	-				+1.2
2,415,067	-				+0.6
2,415,067	-				-0.2
2,415,067	-				-0.1
2,415,067	-				-0.8
2,415,067	-				+0.6
2,415,067	-				+0.3
2,415,067	-				+0.1
2,415,067	-				-0.7
2,415,067	-				-0.1
2,415,067	-				+0.1
2,415,067	-				+1.2
2,415,067	-				+0.1
2,415,067	-				-0.4
2,415,067	-				+0.8
2,415,068	-				+0.3
2,415,075	+				-0.3
2,415,075	+				-0.4
2,415,075	+				-0.4
2,415,078	-				+1.6
2,415,085	+				-0.8
2,415,085	+				-0.6
2,415,085	+				-0.2
2,415,087	+				-0.3
2,415,089	-				+0.5
2,415,091	+				+1.1
2,415,095	-				-0.1
2,415,106	+				+0.2
2,415,106	-				-0.5
2,415,106	-				+0.0
2,415,115	-				+0.3
2,415,123	-				+0.2
2,415,130	+				+0.2
2,415,130	+				+0.3
2,415,133	+				+0.6
2,415,133	-				-1.2
2,415,135	+				-0.2
2,415,135	+				-0.4
2,415,135	+				+0.5
2,415,138	+				-0.1
2,415,138	+				-0.4
2,415,138	-				+0.0
2,415,143	-				+0.7
2,415,143	-				+0.6
2,415,145	+				+1.0
2,415,145	+				+1.1
2,415,146	-				+0.2
2,415,153	-				+0.5
2,415,161	+				+0.3
2,415,161	-				-0.3
2,415,163	+				+0.9
2,415,163	+				-0.4
2,415,163	+				+0.5
2,415,168	+				+0.3
2,415,171	+				-1.0
2,415,171	+				+0.6
2,415,171	-				+0.8
2,415,175	+				+0.3
2,415,175	+				-0.4
2,415,175	+				+0.1
2,415,175	+				+0.2
2,415,175	+				+0.3
2,415,177	+				-0.2
2,415,179	-				+0.5
2,415,183	-				-0.2
2,415,183	-				-0.8
2,415,183	-				-1.4
2,415,183	-				+0.2
2,415,183	-				-0.5
2,415,185	-				-0.2
2,415,194	+				-0.1
2,415,194	+				-0.5
2,415,194	+				-0.2
2,415,195	-				+0.1
2,415,195	-				+0.3
2,415,195	-				-0.2
2,415,202	-				-0.0
2,415,202	-				-0.3
2,415,204	+				+0.9
2,415,207	-				+0.3
2,415,220	+				-0.2
2,415,220	+				-0.5
2,415,220	+				+0.5
2,415,228	-				+0.7
2,415,235	+				+0.7
2,415,236	+				-0.2
2,415,242	+				+0.6
2,415,242	-				+0.3
2,415,244	-				-0.5
2,415,244	-				-1.5
2,415,250	-				+0.6
2,415,271	+				+0.4
2,415,271	+				+0.4
2,415,271	+				+0.4
2,415,272	+				+0.8
2,415,272	+				+0.5
2,415,273	+				-0.4
2,415,279	-				-0.7
2,415,285	+				-0.5
2,415,285	+				+0.3
2,415,285	+				-0.2
2,415,285	+				+0.1
2,415,285	+				+0.6
2,415,285	+				+0.7
2,415,290	-				-2.2
2,415,293	-				-1.0
2,415,293	-				+1.1
2,415,293	-				-1.6
2,415,293	-				-0.3
2,415,293	-				+0.5
2,415,293	-				+0.3
2,415,294	+				-0.9
2,415,300	-				-0.9
2,415,302	+				+0.0
2,415,313	+				-0.9
2,415,313	+				-0.2
2,415,313	+				+0.5
2,415,313	+				-0.5
2,415,320	+				-0.2
2,415,320	+				-0.8
2,415,321	-				-0.3
2,415,321	-				-0.3
2,415,328	+				-0.3
2,415,331	-				-0.0
2,415,336	-				-0.1
2,415,336	-				+0.2
2,415,347	-				-0.2
2,415,352	-				-0.0
2,415,352	-				-0.8
2,415,354	+				-0.3
2,415,360	+				-0.8
2,415,360	+				+0.4
2,415,367	+				-0.1
2,415,368	-				+0.6
2,415,370	+				-0.6
2,415,370	+				-0.3
2,415,374	+				-0.2
2,415,374	+				-0.0
2,415,380	+				+0.5
2,415,382	+				-0.5
2,415,382	+				-0.1
2,415,382	-				-0.7
2,415,388	-				+0.3
2,415,390	-				-0.0
2,415,390	-				-0.6
2,415,390	-				-0.8
2,415,390	-				-0.9
2,415,390	-				-0.5
2,415,392	-				-0.7
2,415,396	-				-0.8
2,415,418	+				-0.6
2,415,421	+				-1.1
2,415,421	+				+0.4
2,415,421	+				-1.3
2,415,426	+				+0.3
2,415,426	+				+0.5
2,415,426	+				-1.1
2,415,426	-				-0.7
2,415,426	-				+0.0
2,415,426	-				-0.4
2,415,428	+				-0.1
2,415,429	-				-0.0
2,415,431	-				-0.1
2,415,434	-				-0.7
2,415,434	-				-0.8
2,415,434	-				+0.3
2,415,434	-				-0.1
2,415,442	+				+0.0
2,415,444	-				+0.0
2,415,447	+				-0.1
2,415,449	+				-0.4
2,415,450	+				+0.3
2,415,450	+				-0.8
2,415,455	+				-0.5
2,415,458	-				-0.4
2,415,458	-				-0.8
2,415,463	+				-0.4
2,415,463	-				-0.8
2,415,477	+				-0.2
2,415,492	+				-1.3
2,415,500	-				-0.3
2,415,524	+				-1.1
2,415,524	+				-0.8
2,415,539	-				-0.5
2,415,539	-				-0.3
2,415,541	+				-0.7
2,415,541	+				-1.5
2,415,544	-				-0.4
2,415,571	+		BBR_RS20455	0.12	-0.5
2,415,590	-		BBR_RS20455	0.14	-0.0
2,415,635	-		BBR_RS20455	0.18	+0.4
2,415,687	-		BBR_RS20455	0.23	+1.4
2,415,695	+		BBR_RS20455	0.24	+0.6
2,415,708	+		BBR_RS20455	0.25	+0.2
2,415,712	+		BBR_RS20455	0.25	-1.9
2,415,740	+		BBR_RS20455	0.28	-1.2
2,415,740	+		BBR_RS20455	0.28	-0.3
2,415,748	-		BBR_RS20455	0.29	-1.5
2,415,758	-		BBR_RS20455	0.30	-1.0
2,415,768	-		BBR_RS20455	0.31	-1.0
2,415,861	+		BBR_RS20455	0.40	+0.4
2,415,861	-		BBR_RS20455	0.40	+0.4
2,415,871	+		BBR_RS20455	0.41	+0.8
2,415,920	-		BBR_RS20455	0.46	-0.6
2,415,965	-		BBR_RS20455	0.50	-2.4
2,416,010	-		BBR_RS20455	0.55	-1.5
2,416,015	-		BBR_RS20455	0.55	+1.1
2,416,028	-		BBR_RS20455	0.56	-2.1
2,416,056	-		BBR_RS20455	0.59	-1.3
2,416,058	+		BBR_RS20455	0.59	+0.1
2,416,072	+		BBR_RS20455	0.61	-0.8
2,416,072	+		BBR_RS20455	0.61	+1.1
2,416,080	-		BBR_RS20455	0.62	-0.0
2,416,105	+		BBR_RS20455	0.64	-0.5
2,416,128	-		BBR_RS20455	0.66	-0.2
2,416,141	-		BBR_RS20455	0.68	-0.1
2,416,157	-		BBR_RS20455	0.69	+0.3
2,416,191	+		BBR_RS20455	0.72	-0.6
2,416,235	-		BBR_RS20455	0.77	-1.7
2,416,267	+		BBR_RS20455	0.80	-1.2
2,416,271	-		BBR_RS20455	0.80	-1.2
2,416,272	+		BBR_RS20455	0.80	+0.5
2,416,275	-		BBR_RS20455	0.81	-0.1
2,416,297	+		BBR_RS20455	0.83	-1.3
2,416,302	+		BBR_RS20455	0.83	-0.1
2,416,305	-		BBR_RS20455	0.84	-0.9
2,416,305	-		BBR_RS20455	0.84	+0.2
2,416,340	+		BBR_RS20455	0.87	-0.3
2,416,340	+		BBR_RS20455	0.87	-0.6
2,416,344	-		BBR_RS20455	0.87	+0.4
2,416,346	-		BBR_RS20455	0.88	-0.5
2,416,364	-		BBR_RS20455	0.89	-0.5
2,416,401	-				+0.6
2,416,428	-				+1.2
2,416,428	-				-1.3
2,416,428	-				+0.6
2,416,439	+				-0.2
2,416,440	+				+0.6
2,416,446	+				-1.1
2,416,453	+				-0.2
2,416,456	+				+0.5
2,416,456	+				-2.4
2,416,456	+				+0.0
2,416,457	+				-1.0
2,416,461	-				+0.5
2,416,464	+				+0.4
2,416,478	+				+0.1
2,416,478	-				+0.5
2,416,480	+				-0.0
2,416,480	+				-0.1
2,416,488	-				+0.4
2,416,488	-				+0.7
2,416,495	+				-0.1
2,416,497	+				+0.3
2,416,497	+				+0.5
2,416,497	+				-0.3
2,416,497	+				-0.1
2,416,497	+				+0.4
2,416,498	-				-0.8
2,416,505	+				-0.8
2,416,505	-				+0.2
2,416,505	-				-0.2
2,416,505	-				-1.0
2,416,505	-				-0.4
2,416,505	-				-1.0
2,416,505	-				+0.3
2,416,505	-				+0.5
2,416,505	-				+0.3
2,416,505	-				-0.1
2,416,505	-				+0.0
2,416,508	-				-0.4
2,416,510	+				+0.3
2,416,513	-				+0.1
2,416,513	-				+0.4
2,416,518	-				+0.5
2,416,518	-				-0.4
2,416,523	-				-0.6
2,416,523	-				-0.3
2,416,523	-				+0.5
2,416,523	-				-0.6
2,416,523	-				-0.5
2,416,524	+				+0.1
2,416,537	+				-0.1
2,416,542	+				+0.3
2,416,542	+				-0.1
2,416,542	-				-0.8
2,416,542	-				+0.1
2,416,542	-				-2.8
2,416,550	-				+0.3
2,416,550	-				+0.0
2,416,550	-				-0.4
2,416,550	-				+0.2
2,416,552	+				-0.6
2,416,556	+				-0.2
2,416,561	+				+0.6
2,416,561	+				-0.4
2,416,564	-				-1.5
2,416,564	-				+0.1
2,416,570	+				-0.1
2,416,578	-				-0.5
2,416,578	-				+0.6
2,416,578	-				-0.6
2,416,578	-				+0.0
2,416,593	-				-0.5
2,416,597	+				-0.9
2,416,605	-				+1.4
2,416,607	+				+0.5
2,416,615	-				-1.6
2,416,615	-				-0.3
2,416,615	-				-0.3
2,416,625	-				-0.6
2,416,625	-				-0.1
2,416,707	-				-0.8
2,416,743	+		BBR_RS20460	0.12	+0.7
2,416,825	-		BBR_RS20460	0.19	-0.5
2,416,898	+		BBR_RS20460	0.24	-0.4
2,416,911	-		BBR_RS20460	0.26	-1.3
2,416,968	-		BBR_RS20460	0.30	-1.3
2,416,978	-		BBR_RS20460	0.31	+0.2
2,417,082	+		BBR_RS20460	0.39	+1.1
2,417,112	-		BBR_RS20460	0.41	-1.7
2,417,146	+		BBR_RS20460	0.44	+0.3
2,417,187	-		BBR_RS20460	0.47	-0.0
2,417,216	+		BBR_RS20460	0.50	+0.2
2,417,236	+		BBR_RS20460	0.51	-0.1
2,417,304	-		BBR_RS20460	0.57	+0.1
2,417,309	-		BBR_RS20460	0.57	+0.1
2,417,311	-		BBR_RS20460	0.57	+0.1
2,417,361	-		BBR_RS20460	0.61	-0.9
2,417,363	+		BBR_RS20460	0.61	+2.5