Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19535

Experiment: Recovery broth with Lacidipine 0.4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Lacidipine 0.4 mM
2,165,352	-		BBR_RS19530	0.41	-0.5
2,165,352	-		BBR_RS19530	0.41	-0.4
2,165,352	-		BBR_RS19530	0.41	-0.2
2,165,384	+		BBR_RS19530	0.43	+0.6
2,165,403	-		BBR_RS19530	0.44	-0.9
2,165,403	-		BBR_RS19530	0.44	+0.5
2,165,403	-		BBR_RS19530	0.44	-0.8
2,165,414	-		BBR_RS19530	0.45	-0.4
2,165,450	+		BBR_RS19530	0.47	-0.0
2,165,450	+		BBR_RS19530	0.47	-0.3
2,165,458	+		BBR_RS19530	0.48	+1.2
2,165,463	+		BBR_RS19530	0.48	+0.5
2,165,464	-		BBR_RS19530	0.48	+0.3
2,165,490	-		BBR_RS19530	0.50	-1.0
2,165,501	+		BBR_RS19530	0.51	+0.3
2,165,501	+		BBR_RS19530	0.51	+0.1
2,165,502	+		BBR_RS19530	0.51	-0.2
2,165,510	-		BBR_RS19530	0.51	-0.8
2,165,510	-		BBR_RS19530	0.51	+0.0
2,165,525	-		BBR_RS19530	0.52	-0.1
2,165,526	+		BBR_RS19530	0.53	-0.7
2,165,527	-		BBR_RS19530	0.53	+0.7
2,165,529	-		BBR_RS19530	0.53	+0.9
2,165,548	-		BBR_RS19530	0.54	+2.6
2,165,557	+		BBR_RS19530	0.55	-1.4
2,165,557	+		BBR_RS19530	0.55	-1.5
2,165,557	+		BBR_RS19530	0.55	+0.6
2,165,557	+		BBR_RS19530	0.55	+1.1
2,165,557	+		BBR_RS19530	0.55	-0.1
2,165,565	-		BBR_RS19530	0.55	+0.2
2,165,572	+		BBR_RS19530	0.56	+0.5
2,165,572	+		BBR_RS19530	0.56	+0.7
2,165,572	+		BBR_RS19530	0.56	+0.3
2,165,572	+		BBR_RS19530	0.56	-0.8
2,165,580	-		BBR_RS19530	0.56	-1.4
2,165,580	-		BBR_RS19530	0.56	-0.2
2,165,580	-		BBR_RS19530	0.56	+1.5
2,165,580	-		BBR_RS19530	0.56	+0.9
2,165,580	-		BBR_RS19530	0.56	-0.2
2,165,607	-		BBR_RS19530	0.58	-0.6
2,165,608	-		BBR_RS19530	0.58	-0.9
2,165,609	+		BBR_RS19530	0.58	-0.3
2,165,610	+		BBR_RS19530	0.58	+0.4
2,165,623	-		BBR_RS19530	0.59	-1.2
2,165,641	-		BBR_RS19530	0.60	+0.2
2,165,642	+		BBR_RS19530	0.61	+0.2
2,165,650	-		BBR_RS19530	0.61	-0.7
2,165,657	+		BBR_RS19530	0.62	-0.9
2,165,657	+		BBR_RS19530	0.62	-0.4
2,165,677	-		BBR_RS19530	0.63	-0.5
2,165,743	-		BBR_RS19530	0.67	-0.4
2,165,754	+		BBR_RS19530	0.68	-0.9
2,165,754	+		BBR_RS19530	0.68	+0.6
2,165,755	+		BBR_RS19530	0.68	+0.4
2,165,755	+		BBR_RS19530	0.68	-0.0
2,165,762	-		BBR_RS19530	0.69	+0.5
2,165,762	-		BBR_RS19530	0.69	+0.1
2,165,762	-		BBR_RS19530	0.69	-0.5
2,165,763	-		BBR_RS19530	0.69	+0.5
2,165,763	-		BBR_RS19530	0.69	+0.3
2,165,763	-		BBR_RS19530	0.69	-0.8
2,165,763	-		BBR_RS19530	0.69	-0.0
2,165,763	-		BBR_RS19530	0.69	-0.0
2,165,763	-		BBR_RS19530	0.69	+0.1
2,165,796	-		BBR_RS19530	0.71	+0.1
2,165,799	-		BBR_RS19530	0.71	-0.7
2,165,806	-		BBR_RS19530	0.72	-0.0
2,165,845	+		BBR_RS19530	0.75	+0.7
2,165,855	+		BBR_RS19530	0.75	-0.7
2,165,861	+		BBR_RS19530	0.76	-0.2
2,165,882	+		BBR_RS19530	0.77	-0.3
2,165,882	+		BBR_RS19530	0.77	+0.1
2,165,885	-		BBR_RS19530	0.77	-0.1
2,165,889	+		BBR_RS19530	0.78	+0.9
2,165,890	-		BBR_RS19530	0.78	+0.1
2,165,979	+		BBR_RS19530	0.84	+0.1
2,165,987	-		BBR_RS19530	0.84	-0.4
2,165,987	-		BBR_RS19530	0.84	+0.4
2,165,987	-		BBR_RS19530	0.84	-0.6
2,165,989	+		BBR_RS19530	0.84	-0.2
2,165,997	-		BBR_RS19530	0.85	+0.1
2,166,012	+		BBR_RS19530	0.86	+0.4
2,166,012	+		BBR_RS19530	0.86	-0.2
2,166,012	+		BBR_RS19530	0.86	-0.9
2,166,012	+		BBR_RS19530	0.86	+1.2
2,166,012	+		BBR_RS19530	0.86	+0.2
2,166,012	+		BBR_RS19530	0.86	-0.6
2,166,012	+		BBR_RS19530	0.86	+0.0
2,166,012	+		BBR_RS19530	0.86	+0.2
2,166,018	+		BBR_RS19530	0.86	-0.3
2,166,020	-		BBR_RS19530	0.87	+0.7
2,166,020	-		BBR_RS19530	0.87	-0.7
2,166,020	-		BBR_RS19530	0.87	+0.4
2,166,020	-		BBR_RS19530	0.87	-0.9
2,166,020	-		BBR_RS19530	0.87	-0.0
2,166,020	-		BBR_RS19530	0.87	+0.1
2,166,020	-		BBR_RS19530	0.87	+0.6
2,166,020	-		BBR_RS19530	0.87	-0.2
2,166,020	-		BBR_RS19530	0.87	+0.8
2,166,020	-		BBR_RS19530	0.87	+0.6
2,166,020	-		BBR_RS19530	0.87	+0.4
2,166,020	-		BBR_RS19530	0.87	-0.2
2,166,024	+		BBR_RS19530	0.87	+0.2
2,166,026	-		BBR_RS19530	0.87	+0.3
2,166,026	-		BBR_RS19530	0.87	-1.3
2,166,032	-		BBR_RS19530	0.87	-0.4
2,166,032	-		BBR_RS19530	0.87	-0.6
2,166,056	+		BBR_RS19530	0.89	+0.9
2,166,093	+				+0.1
2,166,101	-				-0.8
2,166,101	-				-0.4
2,166,143	+				+0.1
2,166,148	+				+1.2
2,166,161	-				+0.2
2,166,177	+				+0.1
2,166,177	+				+0.4
2,166,185	-				+0.5
2,166,185	-				+0.6
2,166,186	-				-0.2
2,166,233	-				+0.1
2,166,233	-				-0.7
2,166,255	-				+1.3
2,166,257	+				-1.0
2,166,257	-				-0.9
2,166,263	+				+0.6
2,166,263	+				-0.5
2,166,263	+				-0.0
2,166,265	-				-0.3
2,166,269	+				-1.4
2,166,271	-				-0.0
2,166,283	+				-0.3
2,166,283	+				-0.3
2,166,284	+				+0.2
2,166,291	-				-0.3
2,166,291	-				-0.8
2,166,296	-				+0.3
2,166,298	+				-2.1
2,166,298	+				-0.8
2,166,306	-				+0.2
2,166,306	-				+0.3
2,166,307	-				+0.0
2,166,317	+				+0.3
2,166,358	-				-1.1
2,166,358	-				+0.4
2,166,380	+				+0.7
2,166,380	+				-0.3
2,166,380	+				-2.3
2,166,388	-				-1.4
2,166,389	+				+0.6
2,166,389	+				+0.1
2,166,401	-				-0.6
2,166,426	+				-1.4
2,166,426	+				-1.0
2,166,426	+				+0.2
2,166,431	+				+0.1
2,166,434	-				+1.0
2,166,434	-				-0.1
2,166,436	+				-0.6
2,166,463	+				-1.7
2,166,472	-		BBR_RS19535	0.11	-1.1
2,166,487	+		BBR_RS19535	0.12	-0.8
2,166,494	+		BBR_RS19535	0.13	-0.2
2,166,502	-		BBR_RS19535	0.13	-0.8
2,166,502	-		BBR_RS19535	0.13	-1.5
2,166,512	+		BBR_RS19535	0.14	-0.7
2,166,520	-		BBR_RS19535	0.15	-0.4
2,166,520	-		BBR_RS19535	0.15	-2.3
2,166,524	+		BBR_RS19535	0.15	-1.3
2,166,524	+		BBR_RS19535	0.15	+0.3
2,166,529	+		BBR_RS19535	0.16	-0.9
2,166,532	-		BBR_RS19535	0.16	-0.4
2,166,532	-		BBR_RS19535	0.16	-2.3
2,166,559	+		BBR_RS19535	0.19	-0.9
2,166,559	+		BBR_RS19535	0.19	-2.3
2,166,559	+		BBR_RS19535	0.19	-0.7
2,166,559	+		BBR_RS19535	0.19	-1.2
2,166,562	-		BBR_RS19535	0.19	-1.3
2,166,569	+		BBR_RS19535	0.19	-2.6
2,166,592	+		BBR_RS19535	0.22	-1.6
2,166,602	+		BBR_RS19535	0.22	-1.0
2,166,602	+		BBR_RS19535	0.22	-1.4
2,166,602	+		BBR_RS19535	0.22	-1.5
2,166,602	+		BBR_RS19535	0.22	-2.2
2,166,602	+		BBR_RS19535	0.22	+0.1
2,166,605	+		BBR_RS19535	0.23	-1.3
2,166,605	+		BBR_RS19535	0.23	-1.7
2,166,615	-		BBR_RS19535	0.24	-2.6
2,166,617	+		BBR_RS19535	0.24	-2.2
2,166,625	-		BBR_RS19535	0.25	-1.2
2,166,625	-		BBR_RS19535	0.25	-0.3
2,166,625	-		BBR_RS19535	0.25	-1.2
2,166,625	-		BBR_RS19535	0.25	-0.2
2,166,625	-		BBR_RS19535	0.25	-0.0
2,166,625	-		BBR_RS19535	0.25	-0.0
2,166,627	+		BBR_RS19535	0.25	-0.7
2,166,628	+		BBR_RS19535	0.25	-0.1
2,166,635	-		BBR_RS19535	0.25	-1.5
2,166,638	+		BBR_RS19535	0.26	-0.8
2,166,648	+		BBR_RS19535	0.27	-1.0
2,166,680	+		BBR_RS19535	0.29	+0.1
2,166,691	+		BBR_RS19535	0.30	-0.3
2,166,738	+		BBR_RS19535	0.35	-1.4
2,166,746	+		BBR_RS19535	0.35	-1.8
2,166,746	+		BBR_RS19535	0.35	-1.8
2,166,746	+		BBR_RS19535	0.35	-0.3
2,166,746	-		BBR_RS19535	0.35	+0.4
2,166,751	+		BBR_RS19535	0.36	-1.8
2,166,751	+		BBR_RS19535	0.36	-1.8
2,166,754	-		BBR_RS19535	0.36	+0.2
2,166,754	-		BBR_RS19535	0.36	-0.7
2,166,754	-		BBR_RS19535	0.36	+0.6
2,166,756	+		BBR_RS19535	0.36	+0.6
2,166,759	+		BBR_RS19535	0.37	+1.4
2,166,759	+		BBR_RS19535	0.37	-2.0
2,166,759	-		BBR_RS19535	0.37	-0.1
2,166,759	-		BBR_RS19535	0.37	-0.3
2,166,781	+		BBR_RS19535	0.39	-1.3
2,166,781	+		BBR_RS19535	0.39	-1.5
2,166,781	+		BBR_RS19535	0.39	-1.0
2,166,781	+		BBR_RS19535	0.39	-1.0
2,166,789	-		BBR_RS19535	0.39	-1.6
2,166,802	+		BBR_RS19535	0.40	-1.1
2,166,813	-		BBR_RS19535	0.41	+0.3
2,166,825	+		BBR_RS19535	0.42	+0.3
2,166,830	+		BBR_RS19535	0.43	-1.2
2,166,830	+		BBR_RS19535	0.43	-0.6
2,166,830	+		BBR_RS19535	0.43	-0.7
2,166,830	+		BBR_RS19535	0.43	-2.0
2,166,830	+		BBR_RS19535	0.43	-0.6
2,166,830	+		BBR_RS19535	0.43	-0.3
2,166,838	-		BBR_RS19535	0.44	-1.0
2,166,838	-		BBR_RS19535	0.44	-0.7
2,166,838	-		BBR_RS19535	0.44	-1.4
2,166,838	-		BBR_RS19535	0.44	+0.9
2,166,838	-		BBR_RS19535	0.44	-0.6
2,166,838	-		BBR_RS19535	0.44	-1.5
2,166,838	-		BBR_RS19535	0.44	-1.0
2,166,858	-		BBR_RS19535	0.45	-0.2
2,166,860	-		BBR_RS19535	0.46	-0.3
2,166,862	+		BBR_RS19535	0.46	-1.3
2,166,867	+		BBR_RS19535	0.46	-1.7
2,166,867	+		BBR_RS19535	0.46	-2.4
2,166,867	+		BBR_RS19535	0.46	-0.7
2,166,870	-		BBR_RS19535	0.47	-0.6
2,166,875	-		BBR_RS19535	0.47	-0.9
2,166,875	-		BBR_RS19535	0.47	+0.0
2,166,878	+		BBR_RS19535	0.47	-1.0
2,166,893	-		BBR_RS19535	0.49	-1.2
2,166,904	-		BBR_RS19535	0.50	-1.5
2,166,919	-		BBR_RS19535	0.51	-0.2
2,166,940	+		BBR_RS19535	0.53	-0.1
2,166,940	+		BBR_RS19535	0.53	-0.5
2,166,948	-		BBR_RS19535	0.54	+1.0
2,166,948	-		BBR_RS19535	0.54	+0.3
2,166,988	-		BBR_RS19535	0.57	-1.9
2,166,998	+		BBR_RS19535	0.58	-0.3
2,167,005	-		BBR_RS19535	0.59	-1.0
2,167,005	-		BBR_RS19535	0.59	-0.8
2,167,007	-		BBR_RS19535	0.59	-1.9
2,167,009	+		BBR_RS19535	0.59	-0.5
2,167,028	+		BBR_RS19535	0.61	-0.3
2,167,028	+		BBR_RS19535	0.61	-2.2
2,167,029	-		BBR_RS19535	0.61	+0.4
2,167,032	+		BBR_RS19535	0.61	+0.1
2,167,032	+		BBR_RS19535	0.61	+0.4
2,167,034	+		BBR_RS19535	0.61	-0.3
2,167,034	-		BBR_RS19535	0.61	-1.4
2,167,040	-		BBR_RS19535	0.62	-0.4
2,167,040	-		BBR_RS19535	0.62	-1.0
2,167,042	+		BBR_RS19535	0.62	-1.2
2,167,048	-		BBR_RS19535	0.63	-0.2
2,167,048	-		BBR_RS19535	0.63	-0.3
2,167,052	+		BBR_RS19535	0.63	-1.2
2,167,052	+		BBR_RS19535	0.63	-2.5
2,167,052	+		BBR_RS19535	0.63	-0.8
2,167,052	+		BBR_RS19535	0.63	-1.6
2,167,052	+		BBR_RS19535	0.63	-0.6
2,167,052	+		BBR_RS19535	0.63	+0.3
2,167,060	-		BBR_RS19535	0.64	+0.3
2,167,060	-		BBR_RS19535	0.64	+0.1
2,167,078	+		BBR_RS19535	0.65	-1.0
2,167,080	+		BBR_RS19535	0.65	-1.9
2,167,088	+		BBR_RS19535	0.66	-1.0
2,167,090	+		BBR_RS19535	0.66	-1.2
2,167,090	+		BBR_RS19535	0.66	-0.4
2,167,096	-		BBR_RS19535	0.67	-2.2
2,167,098	-		BBR_RS19535	0.67	-1.1
2,167,102	+		BBR_RS19535	0.67	+0.7
2,167,102	+		BBR_RS19535	0.67	-0.3
2,167,114	+		BBR_RS19535	0.68	-0.7
2,167,149	+		BBR_RS19535	0.72	+0.5
2,167,159	-		BBR_RS19535	0.73	+0.1
2,167,174	-		BBR_RS19535	0.74	-2.1
2,167,174	-		BBR_RS19535	0.74	-0.8
2,167,174	-		BBR_RS19535	0.74	-0.3
2,167,179	-		BBR_RS19535	0.74	+0.2
2,167,183	+		BBR_RS19535	0.75	-0.8
2,167,200	+		BBR_RS19535	0.76	-0.8
2,167,202	-		BBR_RS19535	0.76	+0.2
2,167,222	+		BBR_RS19535	0.78	-0.3
2,167,239	-		BBR_RS19535	0.80	-1.1
2,167,249	+		BBR_RS19535	0.81	-0.2
2,167,249	+		BBR_RS19535	0.81	-1.7
2,167,257	-		BBR_RS19535	0.81	-1.1
2,167,285	+		BBR_RS19535	0.84	-1.0
2,167,286	+		BBR_RS19535	0.84	-2.0
2,167,286	-		BBR_RS19535	0.84	-0.4
2,167,296	-		BBR_RS19535	0.85	-0.5
2,167,318	+		BBR_RS19535	0.87	-1.8
2,167,318	+		BBR_RS19535	0.87	-0.6
2,167,318	+		BBR_RS19535	0.87	-1.3
2,167,362	+				-1.4
2,167,370	-				-0.8
2,167,370	-				-1.2
2,167,370	-				-0.6
2,167,370	-				-0.6
2,167,375	-				-1.6
2,167,403	+				-0.7
2,167,437	+				-1.2
2,167,445	+				+0.3
2,167,445	-				-0.6
2,167,445	-				-0.8
2,167,451	-				-0.7
2,167,451	-				-1.3
2,167,453	-				-0.6
2,167,453	-				-0.5
2,167,453	-				+0.1
2,167,453	-				+0.5
2,167,455	-				-1.3
2,167,458	+				+1.4
2,167,467	-				-1.0
2,167,490	+				+0.4
2,167,492	+				-0.4
2,167,492	+				-0.7
2,167,501	+				+0.1
2,167,514	+				+0.9
2,167,514	+				+0.3
2,167,514	+				+1.0
2,167,514	+				-1.7
2,167,522	+				-0.3
2,167,522	-				-0.9
2,167,522	-				+0.2
2,167,522	-				-0.0
2,167,522	-				+0.9
2,167,533	+				+1.2
2,167,539	-				-0.5
2,167,547	+				-0.4
2,167,547	+				+0.9
2,167,547	+				+0.7
2,167,548	+				+0.4
2,167,554	-				-0.1
2,167,555	-				-0.2
2,167,556	+				+0.4
2,167,557	+				+0.1
2,167,557	+				+0.4
2,167,563	-				-0.7
2,167,563	-				-0.9
2,167,564	-				-0.1
2,167,585	+				-0.4
2,167,593	-				-0.6
2,167,625	-				+0.8
2,167,644	-				+0.4
2,167,704	+		BBR_RS19540	0.11	+1.8
2,167,710	-		BBR_RS19540	0.11	-1.4
2,167,713	+		BBR_RS19540	0.12	+0.6
2,167,721	-		BBR_RS19540	0.12	+0.6
2,167,726	+		BBR_RS19540	0.13	+1.4
2,167,734	-		BBR_RS19540	0.13	-1.5
2,167,742	-		BBR_RS19540	0.14	+1.1
2,167,790	-		BBR_RS19540	0.18	-1.3
2,167,868	-		BBR_RS19540	0.23	+1.1
2,167,868	-		BBR_RS19540	0.23	-1.6
2,167,877	+		BBR_RS19540	0.24	+0.2
2,167,878	-		BBR_RS19540	0.24	+1.1
2,167,904	-		BBR_RS19540	0.26	-0.5
2,167,955	+		BBR_RS19540	0.30	+1.4
2,168,037	-		BBR_RS19540	0.36	-0.2
2,168,046	+		BBR_RS19540	0.37	+2.4
2,168,205	-		BBR_RS19540	0.49	+0.4
2,168,205	-		BBR_RS19540	0.49	+0.6
2,168,255	-		BBR_RS19540	0.53	+0.1
2,168,257	-		BBR_RS19540	0.53	+0.2
2,168,304	+		BBR_RS19540	0.57	+0.6
2,168,305	-		BBR_RS19540	0.57	+1.1
2,168,312	-		BBR_RS19540	0.57	+2.1
2,168,312	-		BBR_RS19540	0.57	-0.3
2,168,338	+		BBR_RS19540	0.59	+0.6
2,168,354	-		BBR_RS19540	0.60	+1.8