Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17480

Experiment: Recovery broth with Lacidipine 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS17470 and BBR_RS17475 are separated by 237 nucleotidesBBR_RS17475 and BBR_RS17480 are separated by 223 nucleotidesBBR_RS17480 and BBR_RS17485 are separated by 116 nucleotidesBBR_RS17485 and BBR_RS17490 are separated by 38 nucleotides BBR_RS17470: BBR_RS17470 - chaperonin GroEL, at 1,699,528 to 1,701,153 _RS17470 BBR_RS17475: BBR_RS17475 - cold-shock protein, at 1,701,391 to 1,701,630 _RS17475 BBR_RS17480: BBR_RS17480 - hypothetical protein, at 1,701,854 to 1,702,510 _RS17480 BBR_RS17485: BBR_RS17485 - uracil-DNA glycosylase, at 1,702,627 to 1,703,316 _RS17485 BBR_RS17490: BBR_RS17490 - MoxR family ATPase, at 1,703,355 to 1,704,434 _RS17490 Position (kb) 1701 1702 1703Strain fitness (log2 ratio) -2 -1 0 1 2at 1701.277 kb on + strandat 1701.345 kb on + strandat 1701.359 kb on + strandat 1701.359 kb on + strandat 1701.361 kb on - strandat 1701.362 kb on - strandat 1701.367 kb on - strandat 1701.388 kb on + strandat 1701.406 kb on - strandat 1701.410 kb on + strandat 1701.413 kb on - strandat 1701.418 kb on - strand, within BBR_RS17475at 1701.463 kb on + strand, within BBR_RS17475at 1701.464 kb on + strand, within BBR_RS17475at 1701.464 kb on + strand, within BBR_RS17475at 1701.464 kb on + strand, within BBR_RS17475at 1701.464 kb on + strand, within BBR_RS17475at 1701.466 kb on + strand, within BBR_RS17475at 1701.466 kb on + strand, within BBR_RS17475at 1701.472 kb on - strand, within BBR_RS17475at 1701.472 kb on - strand, within BBR_RS17475at 1701.474 kb on + strand, within BBR_RS17475at 1701.474 kb on - strand, within BBR_RS17475at 1701.474 kb on - strand, within BBR_RS17475at 1701.493 kb on - strand, within BBR_RS17475at 1701.552 kb on + strand, within BBR_RS17475at 1701.579 kb on - strand, within BBR_RS17475at 1701.617 kb on - strandat 1701.634 kb on - strandat 1701.635 kb on + strandat 1701.650 kb on + strandat 1701.658 kb on - strandat 1701.670 kb on + strandat 1701.670 kb on + strandat 1701.672 kb on + strandat 1701.673 kb on - strandat 1701.706 kb on + strandat 1701.714 kb on - strandat 1701.722 kb on - strandat 1701.732 kb on - strandat 1701.732 kb on - strandat 1701.814 kb on + strandat 1701.814 kb on - strandat 1701.865 kb on - strandat 1701.890 kb on + strandat 1701.890 kb on + strandat 1701.890 kb on + strandat 1701.898 kb on - strandat 1701.898 kb on - strandat 1701.914 kb on + strandat 1701.957 kb on + strand, within BBR_RS17480at 1701.976 kb on - strand, within BBR_RS17480at 1701.986 kb on + strand, within BBR_RS17480at 1702.025 kb on + strand, within BBR_RS17480at 1702.025 kb on + strand, within BBR_RS17480at 1702.033 kb on - strand, within BBR_RS17480at 1702.033 kb on - strand, within BBR_RS17480at 1702.048 kb on - strand, within BBR_RS17480at 1702.086 kb on + strand, within BBR_RS17480at 1702.105 kb on + strand, within BBR_RS17480at 1702.133 kb on - strand, within BBR_RS17480at 1702.133 kb on - strand, within BBR_RS17480at 1702.214 kb on + strand, within BBR_RS17480at 1702.226 kb on - strand, within BBR_RS17480at 1702.288 kb on - strand, within BBR_RS17480at 1702.327 kb on - strand, within BBR_RS17480at 1702.330 kb on - strand, within BBR_RS17480at 1702.330 kb on - strand, within BBR_RS17480at 1702.522 kb on + strandat 1702.530 kb on - strandat 1702.530 kb on - strandat 1702.584 kb on + strandat 1702.594 kb on + strandat 1702.594 kb on - strandat 1702.594 kb on - strandat 1702.605 kb on + strandat 1702.617 kb on + strandat 1702.620 kb on - strandat 1702.625 kb on - strandat 1702.673 kb on + strandat 1702.673 kb on - strandat 1702.673 kb on - strandat 1702.677 kb on + strandat 1702.677 kb on + strandat 1702.677 kb on + strandat 1702.742 kb on + strand, within BBR_RS17485at 1702.742 kb on + strand, within BBR_RS17485at 1702.776 kb on - strand, within BBR_RS17485at 1702.785 kb on - strand, within BBR_RS17485at 1702.785 kb on - strand, within BBR_RS17485at 1702.785 kb on - strand, within BBR_RS17485at 1702.819 kb on + strand, within BBR_RS17485at 1702.819 kb on + strand, within BBR_RS17485at 1702.827 kb on + strand, within BBR_RS17485at 1702.827 kb on + strand, within BBR_RS17485at 1702.828 kb on + strand, within BBR_RS17485at 1702.891 kb on + strand, within BBR_RS17485at 1702.891 kb on + strand, within BBR_RS17485at 1702.899 kb on - strand, within BBR_RS17485at 1702.899 kb on - strand, within BBR_RS17485at 1702.900 kb on + strand, within BBR_RS17485at 1702.913 kb on - strand, within BBR_RS17485at 1702.913 kb on - strand, within BBR_RS17485at 1702.916 kb on + strand, within BBR_RS17485at 1703.015 kb on - strand, within BBR_RS17485at 1703.016 kb on + strand, within BBR_RS17485at 1703.031 kb on + strand, within BBR_RS17485at 1703.039 kb on - strand, within BBR_RS17485at 1703.039 kb on - strand, within BBR_RS17485at 1703.039 kb on - strand, within BBR_RS17485at 1703.046 kb on + strand, within BBR_RS17485at 1703.046 kb on + strand, within BBR_RS17485at 1703.053 kb on + strand, within BBR_RS17485at 1703.065 kb on - strand, within BBR_RS17485at 1703.087 kb on + strand, within BBR_RS17485at 1703.106 kb on - strand, within BBR_RS17485at 1703.137 kb on + strand, within BBR_RS17485at 1703.145 kb on - strand, within BBR_RS17485at 1703.162 kb on + strand, within BBR_RS17485at 1703.162 kb on + strand, within BBR_RS17485at 1703.162 kb on + strand, within BBR_RS17485at 1703.162 kb on + strand, within BBR_RS17485at 1703.162 kb on + strand, within BBR_RS17485at 1703.162 kb on + strand, within BBR_RS17485at 1703.170 kb on - strand, within BBR_RS17485at 1703.170 kb on - strand, within BBR_RS17485at 1703.170 kb on - strand, within BBR_RS17485at 1703.243 kb on + strand, within BBR_RS17485at 1703.262 kb on + strandat 1703.266 kb on + strandat 1703.266 kb on + strandat 1703.266 kb on + strandat 1703.266 kb on + strandat 1703.274 kb on - strandat 1703.274 kb on - strandat 1703.283 kb on - strandat 1703.293 kb on - strandat 1703.302 kb on + strandat 1703.319 kb on - strandat 1703.319 kb on - strandat 1703.339 kb on + strandat 1703.421 kb on + strandat 1703.429 kb on - strandat 1703.476 kb on + strand, within BBR_RS17490at 1703.482 kb on - strand, within BBR_RS17490at 1703.496 kb on - strand, within BBR_RS17490

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Lacidipine 0.4 mM
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1,701,277 + +0.2
1,701,345 + -0.2
1,701,359 + -0.1
1,701,359 + -0.5
1,701,361 - -1.5
1,701,362 - -0.3
1,701,367 - +1.6
1,701,388 + +0.6
1,701,406 - +0.6
1,701,410 + -1.0
1,701,413 - +0.2
1,701,418 - BBR_RS17475 0.11 +0.5
1,701,463 + BBR_RS17475 0.30 +0.5
1,701,464 + BBR_RS17475 0.30 +0.3
1,701,464 + BBR_RS17475 0.30 -0.9
1,701,464 + BBR_RS17475 0.30 +0.4
1,701,464 + BBR_RS17475 0.30 +0.4
1,701,466 + BBR_RS17475 0.31 +0.3
1,701,466 + BBR_RS17475 0.31 -1.3
1,701,472 - BBR_RS17475 0.34 +0.8
1,701,472 - BBR_RS17475 0.34 +0.9
1,701,474 + BBR_RS17475 0.35 +0.4
1,701,474 - BBR_RS17475 0.35 -0.2
1,701,474 - BBR_RS17475 0.35 -0.6
1,701,493 - BBR_RS17475 0.42 +0.1
1,701,552 + BBR_RS17475 0.67 +0.6
1,701,579 - BBR_RS17475 0.78 -0.0
1,701,617 - +0.6
1,701,634 - +0.1
1,701,635 + +0.8
1,701,650 + -0.5
1,701,658 - +0.4
1,701,670 + +0.0
1,701,670 + +0.2
1,701,672 + +1.0
1,701,673 - -0.3
1,701,706 + +0.3
1,701,714 - +0.3
1,701,722 - -0.5
1,701,732 - +0.7
1,701,732 - +0.2
1,701,814 + -0.2
1,701,814 - -0.6
1,701,865 - +0.1
1,701,890 + -1.0
1,701,890 + +0.6
1,701,890 + -0.8
1,701,898 - +0.6
1,701,898 - +2.6
1,701,914 + -0.3
1,701,957 + BBR_RS17480 0.16 -0.6
1,701,976 - BBR_RS17480 0.19 -0.3
1,701,986 + BBR_RS17480 0.20 -0.2
1,702,025 + BBR_RS17480 0.26 -0.4
1,702,025 + BBR_RS17480 0.26 +0.1
1,702,033 - BBR_RS17480 0.27 -1.1
1,702,033 - BBR_RS17480 0.27 -1.7
1,702,048 - BBR_RS17480 0.30 +0.5
1,702,086 + BBR_RS17480 0.35 -1.3
1,702,105 + BBR_RS17480 0.38 -0.3
1,702,133 - BBR_RS17480 0.42 -1.3
1,702,133 - BBR_RS17480 0.42 +0.1
1,702,214 + BBR_RS17480 0.55 +0.1
1,702,226 - BBR_RS17480 0.57 -0.8
1,702,288 - BBR_RS17480 0.66 -1.8
1,702,327 - BBR_RS17480 0.72 +1.4
1,702,330 - BBR_RS17480 0.72 -0.5
1,702,330 - BBR_RS17480 0.72 -0.7
1,702,522 + -0.3
1,702,530 - +0.0
1,702,530 - +0.1
1,702,584 + -0.5
1,702,594 + -0.0
1,702,594 - -1.1
1,702,594 - -1.2
1,702,605 + -0.6
1,702,617 + -0.9
1,702,620 - +0.4
1,702,625 - -0.0
1,702,673 + -0.5
1,702,673 - +0.0
1,702,673 - -0.3
1,702,677 + +0.2
1,702,677 + +0.7
1,702,677 + +0.6
1,702,742 + BBR_RS17485 0.17 +0.4
1,702,742 + BBR_RS17485 0.17 +0.6
1,702,776 - BBR_RS17485 0.22 -0.1
1,702,785 - BBR_RS17485 0.23 +1.0
1,702,785 - BBR_RS17485 0.23 -2.2
1,702,785 - BBR_RS17485 0.23 +0.2
1,702,819 + BBR_RS17485 0.28 +0.8
1,702,819 + BBR_RS17485 0.28 -0.7
1,702,827 + BBR_RS17485 0.29 +0.3
1,702,827 + BBR_RS17485 0.29 +0.7
1,702,828 + BBR_RS17485 0.29 +0.4
1,702,891 + BBR_RS17485 0.38 +0.1
1,702,891 + BBR_RS17485 0.38 -1.2
1,702,899 - BBR_RS17485 0.39 +1.3
1,702,899 - BBR_RS17485 0.39 -0.7
1,702,900 + BBR_RS17485 0.40 -0.1
1,702,913 - BBR_RS17485 0.41 -0.8
1,702,913 - BBR_RS17485 0.41 -0.6
1,702,916 + BBR_RS17485 0.42 +0.0
1,703,015 - BBR_RS17485 0.56 -0.6
1,703,016 + BBR_RS17485 0.56 +1.6
1,703,031 + BBR_RS17485 0.59 -0.8
1,703,039 - BBR_RS17485 0.60 -0.3
1,703,039 - BBR_RS17485 0.60 -0.3
1,703,039 - BBR_RS17485 0.60 -1.1
1,703,046 + BBR_RS17485 0.61 -0.5
1,703,046 + BBR_RS17485 0.61 -0.7
1,703,053 + BBR_RS17485 0.62 -0.3
1,703,065 - BBR_RS17485 0.63 +0.2
1,703,087 + BBR_RS17485 0.67 -0.5
1,703,106 - BBR_RS17485 0.69 +0.0
1,703,137 + BBR_RS17485 0.74 +0.4
1,703,145 - BBR_RS17485 0.75 -0.1
1,703,162 + BBR_RS17485 0.78 +0.2
1,703,162 + BBR_RS17485 0.78 +0.7
1,703,162 + BBR_RS17485 0.78 +1.0
1,703,162 + BBR_RS17485 0.78 +0.9
1,703,162 + BBR_RS17485 0.78 -0.2
1,703,162 + BBR_RS17485 0.78 +0.5
1,703,170 - BBR_RS17485 0.79 +1.0
1,703,170 - BBR_RS17485 0.79 +0.3
1,703,170 - BBR_RS17485 0.79 +0.1
1,703,243 + BBR_RS17485 0.89 -0.7
1,703,262 + -0.4
1,703,266 + +0.7
1,703,266 + +0.3
1,703,266 + +0.2
1,703,266 + +0.0
1,703,274 - +0.6
1,703,274 - +0.5
1,703,283 - -1.1
1,703,293 - +0.5
1,703,302 + -0.3
1,703,319 - +0.2
1,703,319 - -0.4
1,703,339 + +0.3
1,703,421 + -0.2
1,703,429 - -0.9
1,703,476 + BBR_RS17490 0.11 +1.1
1,703,482 - BBR_RS17490 0.12 -0.9
1,703,496 - BBR_RS17490 0.13 +0.1

Or see this region's nucleotide sequence