Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS15300

Experiment: Recovery broth with Lacidipine 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS15295 and BBR_RS20900 are separated by 359 nucleotidesBBR_RS20900 and BBR_RS15300 are separated by 39 nucleotidesBBR_RS15300 and BBR_RS15305 are separated by 64 nucleotides BBR_RS15295: BBR_RS15295 - Cof-type HAD-IIB family hydrolase, at 1,204,987 to 1,205,832 _RS15295 BBR_RS20900: BBR_RS20900 - hypothetical protein, at 1,206,192 to 1,206,434 _RS20900 BBR_RS15300: BBR_RS15300 - peroxiredoxin, at 1,206,474 to 1,207,061 _RS15300 BBR_RS15305: BBR_RS15305 - hypothetical protein, at 1,207,126 to 1,207,950 _RS15305 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -2 -1 0 1 2at 1205.531 kb on + strand, within BBR_RS15295at 1205.544 kb on + strand, within BBR_RS15295at 1205.550 kb on - strand, within BBR_RS15295at 1205.643 kb on + strand, within BBR_RS15295at 1205.725 kb on + strand, within BBR_RS15295at 1205.733 kb on - strand, within BBR_RS15295at 1205.757 kb on - strandat 1205.757 kb on - strandat 1205.766 kb on + strandat 1205.766 kb on - strandat 1206.091 kb on - strandat 1206.446 kb on + strandat 1206.475 kb on - strandat 1206.544 kb on - strand, within BBR_RS15300at 1206.588 kb on - strand, within BBR_RS15300at 1206.606 kb on - strand, within BBR_RS15300at 1206.606 kb on - strand, within BBR_RS15300at 1206.667 kb on + strand, within BBR_RS15300at 1206.679 kb on + strand, within BBR_RS15300at 1206.739 kb on + strand, within BBR_RS15300at 1206.834 kb on + strand, within BBR_RS15300at 1206.851 kb on - strand, within BBR_RS15300at 1206.899 kb on - strand, within BBR_RS15300at 1206.901 kb on + strand, within BBR_RS15300at 1206.931 kb on - strand, within BBR_RS15300at 1206.983 kb on + strand, within BBR_RS15300at 1207.054 kb on + strandat 1207.062 kb on - strandat 1207.067 kb on - strandat 1207.083 kb on + strandat 1207.151 kb on - strandat 1207.171 kb on - strandat 1207.293 kb on + strand, within BBR_RS15305at 1207.328 kb on - strand, within BBR_RS15305at 1207.371 kb on - strand, within BBR_RS15305at 1207.379 kb on + strand, within BBR_RS15305at 1207.392 kb on - strand, within BBR_RS15305at 1207.419 kb on + strand, within BBR_RS15305at 1207.419 kb on + strand, within BBR_RS15305at 1207.429 kb on + strand, within BBR_RS15305at 1207.464 kb on + strand, within BBR_RS15305at 1207.584 kb on + strand, within BBR_RS15305at 1207.592 kb on - strand, within BBR_RS15305at 1207.594 kb on + strand, within BBR_RS15305at 1207.777 kb on - strand, within BBR_RS15305at 1207.880 kb on + strandat 1207.992 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Lacidipine 0.4 mM
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1,205,531 + BBR_RS15295 0.64 +0.4
1,205,544 + BBR_RS15295 0.66 -1.0
1,205,550 - BBR_RS15295 0.67 +0.4
1,205,643 + BBR_RS15295 0.78 +0.7
1,205,725 + BBR_RS15295 0.87 -0.2
1,205,733 - BBR_RS15295 0.88 +0.9
1,205,757 - -0.3
1,205,757 - -0.5
1,205,766 + -0.2
1,205,766 - -0.4
1,206,091 - -0.7
1,206,446 + +1.3
1,206,475 - +0.3
1,206,544 - BBR_RS15300 0.12 +0.5
1,206,588 - BBR_RS15300 0.19 -0.3
1,206,606 - BBR_RS15300 0.22 -0.0
1,206,606 - BBR_RS15300 0.22 +0.1
1,206,667 + BBR_RS15300 0.33 +1.8
1,206,679 + BBR_RS15300 0.35 -1.6
1,206,739 + BBR_RS15300 0.45 +0.3
1,206,834 + BBR_RS15300 0.61 -1.9
1,206,851 - BBR_RS15300 0.64 +0.5
1,206,899 - BBR_RS15300 0.72 -1.4
1,206,901 + BBR_RS15300 0.73 -0.5
1,206,931 - BBR_RS15300 0.78 -0.2
1,206,983 + BBR_RS15300 0.87 -0.9
1,207,054 + +0.3
1,207,062 - +1.8
1,207,067 - -1.3
1,207,083 + +0.2
1,207,151 - -0.4
1,207,171 - -1.4
1,207,293 + BBR_RS15305 0.20 +0.3
1,207,328 - BBR_RS15305 0.24 +0.5
1,207,371 - BBR_RS15305 0.30 +0.2
1,207,379 + BBR_RS15305 0.31 +0.4
1,207,392 - BBR_RS15305 0.32 +0.4
1,207,419 + BBR_RS15305 0.36 -0.4
1,207,419 + BBR_RS15305 0.36 -0.1
1,207,429 + BBR_RS15305 0.37 +0.2
1,207,464 + BBR_RS15305 0.41 -0.0
1,207,584 + BBR_RS15305 0.56 +0.2
1,207,592 - BBR_RS15305 0.56 -1.1
1,207,594 + BBR_RS15305 0.57 -0.9
1,207,777 - BBR_RS15305 0.79 +0.9
1,207,880 + +0.9
1,207,992 + +0.8

Or see this region's nucleotide sequence