Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12355

Experiment: Recovery broth with Lacidipine 0.4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12350 and BBR_RS12355 are separated by 159 nucleotidesBBR_RS12355 and BBR_RS12360 are separated by 170 nucleotidesBBR_RS12360 and BBR_RS12365 are separated by 89 nucleotides BBR_RS12350: BBR_RS12350 - acetolactate synthase large subunit, at 522,036 to 524,000 _RS12350 BBR_RS12355: BBR_RS12355 - ribonuclease III, at 524,160 to 524,903 _RS12355 BBR_RS12360: BBR_RS12360 - 50S ribosomal protein L32, at 525,074 to 525,268 _RS12360 BBR_RS12365: BBR_RS12365 - DUF177 domain-containing protein, at 525,358 to 525,978 _RS12365 Position (kb) 524 525Strain fitness (log2 ratio) -2 -1 0 1 2at 523.175 kb on - strand, within BBR_RS12350at 523.177 kb on + strand, within BBR_RS12350at 523.177 kb on + strand, within BBR_RS12350at 523.209 kb on + strand, within BBR_RS12350at 523.214 kb on + strand, within BBR_RS12350at 523.214 kb on + strand, within BBR_RS12350at 523.215 kb on - strand, within BBR_RS12350at 523.215 kb on - strand, within BBR_RS12350at 523.243 kb on + strand, within BBR_RS12350at 523.243 kb on + strand, within BBR_RS12350at 523.243 kb on + strand, within BBR_RS12350at 523.243 kb on + strand, within BBR_RS12350at 523.243 kb on + strand, within BBR_RS12350at 523.243 kb on + strand, within BBR_RS12350at 523.244 kb on - strand, within BBR_RS12350at 523.244 kb on - strand, within BBR_RS12350at 523.245 kb on - strand, within BBR_RS12350at 523.251 kb on - strand, within BBR_RS12350at 523.251 kb on - strand, within BBR_RS12350at 523.251 kb on - strand, within BBR_RS12350at 523.262 kb on + strand, within BBR_RS12350at 523.268 kb on - strand, within BBR_RS12350at 523.280 kb on - strand, within BBR_RS12350at 523.290 kb on + strand, within BBR_RS12350at 523.290 kb on + strand, within BBR_RS12350at 523.303 kb on + strand, within BBR_RS12350at 523.303 kb on - strand, within BBR_RS12350at 523.340 kb on + strand, within BBR_RS12350at 523.348 kb on - strand, within BBR_RS12350at 523.402 kb on + strand, within BBR_RS12350at 523.402 kb on + strand, within BBR_RS12350at 523.404 kb on + strand, within BBR_RS12350at 523.405 kb on - strand, within BBR_RS12350at 523.407 kb on + strand, within BBR_RS12350at 523.407 kb on + strand, within BBR_RS12350at 523.407 kb on + strand, within BBR_RS12350at 523.412 kb on + strand, within BBR_RS12350at 523.429 kb on + strand, within BBR_RS12350at 523.437 kb on - strand, within BBR_RS12350at 523.437 kb on - strand, within BBR_RS12350at 523.462 kb on - strand, within BBR_RS12350at 523.468 kb on + strand, within BBR_RS12350at 523.487 kb on + strand, within BBR_RS12350at 523.521 kb on + strand, within BBR_RS12350at 523.549 kb on + strand, within BBR_RS12350at 523.549 kb on + strand, within BBR_RS12350at 523.557 kb on - strand, within BBR_RS12350at 523.562 kb on - strand, within BBR_RS12350at 523.563 kb on - strand, within BBR_RS12350at 523.563 kb on - strand, within BBR_RS12350at 523.577 kb on + strand, within BBR_RS12350at 523.594 kb on + strand, within BBR_RS12350at 523.619 kb on - strand, within BBR_RS12350at 523.621 kb on + strand, within BBR_RS12350at 523.631 kb on - strand, within BBR_RS12350at 523.631 kb on - strand, within BBR_RS12350at 523.642 kb on + strand, within BBR_RS12350at 523.650 kb on - strand, within BBR_RS12350at 523.668 kb on + strand, within BBR_RS12350at 523.691 kb on + strand, within BBR_RS12350at 523.691 kb on + strand, within BBR_RS12350at 523.698 kb on + strand, within BBR_RS12350at 523.699 kb on - strand, within BBR_RS12350at 523.706 kb on + strand, within BBR_RS12350at 523.716 kb on + strand, within BBR_RS12350at 523.719 kb on - strand, within BBR_RS12350at 523.731 kb on - strand, within BBR_RS12350at 523.736 kb on - strand, within BBR_RS12350at 523.740 kb on + strand, within BBR_RS12350at 523.811 kb on - strandat 523.816 kb on + strandat 523.837 kb on - strandat 523.837 kb on - strandat 523.849 kb on + strandat 523.903 kb on + strandat 523.905 kb on + strandat 523.940 kb on - strandat 523.974 kb on - strandat 523.984 kb on + strandat 523.992 kb on - strandat 524.067 kb on + strandat 524.124 kb on + strandat 524.124 kb on - strandat 524.136 kb on - strandat 524.165 kb on - strandat 524.192 kb on - strandat 524.324 kb on + strand, within BBR_RS12355at 524.327 kb on - strand, within BBR_RS12355at 524.332 kb on - strand, within BBR_RS12355at 524.347 kb on + strand, within BBR_RS12355at 524.355 kb on - strand, within BBR_RS12355at 524.355 kb on - strand, within BBR_RS12355at 524.465 kb on + strand, within BBR_RS12355at 524.468 kb on - strand, within BBR_RS12355at 524.552 kb on - strand, within BBR_RS12355at 524.554 kb on + strand, within BBR_RS12355at 524.621 kb on - strand, within BBR_RS12355at 524.654 kb on - strand, within BBR_RS12355at 524.701 kb on - strand, within BBR_RS12355at 524.789 kb on + strand, within BBR_RS12355at 524.810 kb on + strand, within BBR_RS12355at 524.836 kb on + strandat 524.838 kb on + strandat 524.932 kb on - strandat 524.936 kb on + strandat 524.943 kb on + strandat 524.944 kb on - strandat 524.944 kb on - strandat 524.948 kb on + strandat 524.948 kb on + strandat 524.963 kb on - strandat 524.973 kb on - strandat 524.975 kb on - strandat 524.977 kb on + strandat 524.982 kb on - strandat 524.983 kb on + strandat 525.379 kb on + strandat 525.382 kb on - strandat 525.388 kb on - strandat 525.394 kb on - strandat 525.456 kb on + strand, within BBR_RS12365at 525.456 kb on + strand, within BBR_RS12365at 525.458 kb on - strand, within BBR_RS12365at 525.461 kb on + strand, within BBR_RS12365at 525.464 kb on - strand, within BBR_RS12365at 525.475 kb on + strand, within BBR_RS12365at 525.475 kb on + strand, within BBR_RS12365at 525.476 kb on - strand, within BBR_RS12365at 525.478 kb on - strand, within BBR_RS12365at 525.480 kb on + strand, within BBR_RS12365at 525.488 kb on - strand, within BBR_RS12365at 525.488 kb on - strand, within BBR_RS12365at 525.502 kb on - strand, within BBR_RS12365at 525.528 kb on - strand, within BBR_RS12365at 525.529 kb on - strand, within BBR_RS12365at 525.533 kb on - strand, within BBR_RS12365at 525.602 kb on - strand, within BBR_RS12365at 525.612 kb on - strand, within BBR_RS12365at 525.662 kb on + strand, within BBR_RS12365at 525.667 kb on + strand, within BBR_RS12365at 525.675 kb on - strand, within BBR_RS12365at 525.675 kb on - strand, within BBR_RS12365at 525.676 kb on - strand, within BBR_RS12365at 525.716 kb on + strand, within BBR_RS12365at 525.721 kb on + strand, within BBR_RS12365at 525.735 kb on + strand, within BBR_RS12365at 525.743 kb on - strand, within BBR_RS12365at 525.844 kb on - strand, within BBR_RS12365at 525.850 kb on - strand, within BBR_RS12365at 525.854 kb on - strand, within BBR_RS12365at 525.862 kb on - strand, within BBR_RS12365at 525.890 kb on - strand, within BBR_RS12365at 525.896 kb on + strand, within BBR_RS12365

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Lacidipine 0.4 mM
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523,175 - BBR_RS12350 0.58 +0.0
523,177 + BBR_RS12350 0.58 -0.1
523,177 + BBR_RS12350 0.58 +0.3
523,209 + BBR_RS12350 0.60 -0.0
523,214 + BBR_RS12350 0.60 -0.4
523,214 + BBR_RS12350 0.60 +0.6
523,215 - BBR_RS12350 0.60 +0.1
523,215 - BBR_RS12350 0.60 +0.3
523,243 + BBR_RS12350 0.61 +0.7
523,243 + BBR_RS12350 0.61 -0.5
523,243 + BBR_RS12350 0.61 +0.4
523,243 + BBR_RS12350 0.61 -0.1
523,243 + BBR_RS12350 0.61 +0.5
523,243 + BBR_RS12350 0.61 -0.3
523,244 - BBR_RS12350 0.61 +0.5
523,244 - BBR_RS12350 0.61 +0.6
523,245 - BBR_RS12350 0.62 -1.2
523,251 - BBR_RS12350 0.62 -0.6
523,251 - BBR_RS12350 0.62 +0.5
523,251 - BBR_RS12350 0.62 +0.3
523,262 + BBR_RS12350 0.62 +0.1
523,268 - BBR_RS12350 0.63 +0.2
523,280 - BBR_RS12350 0.63 -0.1
523,290 + BBR_RS12350 0.64 +0.3
523,290 + BBR_RS12350 0.64 +0.2
523,303 + BBR_RS12350 0.64 +0.7
523,303 - BBR_RS12350 0.64 +0.4
523,340 + BBR_RS12350 0.66 +0.2
523,348 - BBR_RS12350 0.67 +0.4
523,402 + BBR_RS12350 0.70 +0.4
523,402 + BBR_RS12350 0.70 +0.2
523,404 + BBR_RS12350 0.70 +0.7
523,405 - BBR_RS12350 0.70 +1.1
523,407 + BBR_RS12350 0.70 -0.4
523,407 + BBR_RS12350 0.70 -1.1
523,407 + BBR_RS12350 0.70 +0.8
523,412 + BBR_RS12350 0.70 -0.5
523,429 + BBR_RS12350 0.71 +1.7
523,437 - BBR_RS12350 0.71 -0.8
523,437 - BBR_RS12350 0.71 -0.4
523,462 - BBR_RS12350 0.73 +0.0
523,468 + BBR_RS12350 0.73 -0.5
523,487 + BBR_RS12350 0.74 +0.2
523,521 + BBR_RS12350 0.76 -0.4
523,549 + BBR_RS12350 0.77 +0.2
523,549 + BBR_RS12350 0.77 +0.2
523,557 - BBR_RS12350 0.77 +0.1
523,562 - BBR_RS12350 0.78 -0.5
523,563 - BBR_RS12350 0.78 -0.2
523,563 - BBR_RS12350 0.78 +0.1
523,577 + BBR_RS12350 0.78 -0.5
523,594 + BBR_RS12350 0.79 +0.0
523,619 - BBR_RS12350 0.81 +0.4
523,621 + BBR_RS12350 0.81 -1.1
523,631 - BBR_RS12350 0.81 +1.2
523,631 - BBR_RS12350 0.81 -0.3
523,642 + BBR_RS12350 0.82 +0.5
523,650 - BBR_RS12350 0.82 +1.2
523,668 + BBR_RS12350 0.83 +0.4
523,691 + BBR_RS12350 0.84 +0.4
523,691 + BBR_RS12350 0.84 +0.8
523,698 + BBR_RS12350 0.85 +1.0
523,699 - BBR_RS12350 0.85 +0.3
523,706 + BBR_RS12350 0.85 +0.2
523,716 + BBR_RS12350 0.85 +0.6
523,719 - BBR_RS12350 0.86 +0.7
523,731 - BBR_RS12350 0.86 -0.1
523,736 - BBR_RS12350 0.87 +0.4
523,740 + BBR_RS12350 0.87 +0.5
523,811 - +0.4
523,816 + +1.7
523,837 - -0.2
523,837 - +0.0
523,849 + +0.2
523,903 + -0.3
523,905 + -1.0
523,940 - -0.7
523,974 - -0.7
523,984 + -0.1
523,992 - +0.3
524,067 + -1.0
524,124 + -0.8
524,124 - +1.7
524,136 - -0.8
524,165 - -1.9
524,192 - -0.3
524,324 + BBR_RS12355 0.22 +2.0
524,327 - BBR_RS12355 0.22 -0.4
524,332 - BBR_RS12355 0.23 +0.1
524,347 + BBR_RS12355 0.25 +2.0
524,355 - BBR_RS12355 0.26 -1.9
524,355 - BBR_RS12355 0.26 -0.7
524,465 + BBR_RS12355 0.41 +0.0
524,468 - BBR_RS12355 0.41 +0.2
524,552 - BBR_RS12355 0.53 +0.9
524,554 + BBR_RS12355 0.53 -0.6
524,621 - BBR_RS12355 0.62 -0.4
524,654 - BBR_RS12355 0.66 -0.5
524,701 - BBR_RS12355 0.73 +0.8
524,789 + BBR_RS12355 0.85 -1.2
524,810 + BBR_RS12355 0.87 -0.5
524,836 + -0.4
524,838 + +1.9
524,932 - +1.0
524,936 + -1.1
524,943 + -0.9
524,944 - +0.3
524,944 - +0.0
524,948 + -0.1
524,948 + -0.6
524,963 - +0.8
524,973 - -0.5
524,975 - +0.4
524,977 + +0.9
524,982 - +0.9
524,983 + +0.1
525,379 + -0.3
525,382 - +1.1
525,388 - +1.2
525,394 - +0.3
525,456 + BBR_RS12365 0.16 -0.0
525,456 + BBR_RS12365 0.16 -1.0
525,458 - BBR_RS12365 0.16 +0.8
525,461 + BBR_RS12365 0.17 +0.8
525,464 - BBR_RS12365 0.17 -0.8
525,475 + BBR_RS12365 0.19 +0.1
525,475 + BBR_RS12365 0.19 -1.2
525,476 - BBR_RS12365 0.19 +1.0
525,478 - BBR_RS12365 0.19 -0.0
525,480 + BBR_RS12365 0.20 +0.0
525,488 - BBR_RS12365 0.21 +0.6
525,488 - BBR_RS12365 0.21 -0.5
525,502 - BBR_RS12365 0.23 +0.3
525,528 - BBR_RS12365 0.27 -0.7
525,529 - BBR_RS12365 0.28 -0.3
525,533 - BBR_RS12365 0.28 -1.4
525,602 - BBR_RS12365 0.39 -1.8
525,612 - BBR_RS12365 0.41 +0.3
525,662 + BBR_RS12365 0.49 -1.2
525,667 + BBR_RS12365 0.50 -0.2
525,675 - BBR_RS12365 0.51 -0.5
525,675 - BBR_RS12365 0.51 +0.6
525,676 - BBR_RS12365 0.51 -0.4
525,716 + BBR_RS12365 0.58 +1.4
525,721 + BBR_RS12365 0.58 +0.9
525,735 + BBR_RS12365 0.61 -1.5
525,743 - BBR_RS12365 0.62 -0.4
525,844 - BBR_RS12365 0.78 -1.5
525,850 - BBR_RS12365 0.79 +0.4
525,854 - BBR_RS12365 0.80 +0.3
525,862 - BBR_RS12365 0.81 +0.3
525,890 - BBR_RS12365 0.86 +1.1
525,896 + BBR_RS12365 0.87 +1.0

Or see this region's nucleotide sequence