Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18535

Experiment: Fungal_growth_media_mCAFEs_v1 with Iron (II) 0.209 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18530 and BWI76_RS18535 overlap by 9 nucleotidesBWI76_RS18535 and BWI76_RS18540 are separated by 170 nucleotidesBWI76_RS18540 and BWI76_RS18545 are separated by 132 nucleotides BWI76_RS18530: BWI76_RS18530 - hypothetical protein, at 3,845,421 to 3,846,353 _RS18530 BWI76_RS18535: BWI76_RS18535 - alpha/beta hydrolase, at 3,846,345 to 3,847,886 _RS18535 BWI76_RS18540: BWI76_RS18540 - signal transduction protein PmrD, at 3,848,057 to 3,848,314 _RS18540 BWI76_RS18545: BWI76_RS18545 - AMP nucleosidase, at 3,848,447 to 3,849,901 _RS18545 Position (kb) 3846 3847 3848Strain fitness (log2 ratio) -2 -1 0 1 2at 3845.541 kb on + strand, within BWI76_RS18530at 3845.546 kb on + strand, within BWI76_RS18530at 3845.584 kb on - strand, within BWI76_RS18530at 3845.608 kb on + strand, within BWI76_RS18530at 3845.704 kb on + strand, within BWI76_RS18530at 3845.728 kb on - strand, within BWI76_RS18530at 3845.886 kb on + strand, within BWI76_RS18530at 3845.891 kb on + strand, within BWI76_RS18530at 3845.899 kb on - strand, within BWI76_RS18530at 3845.964 kb on + strand, within BWI76_RS18530at 3845.982 kb on + strand, within BWI76_RS18530at 3846.101 kb on + strand, within BWI76_RS18530at 3846.194 kb on - strand, within BWI76_RS18530at 3846.223 kb on + strand, within BWI76_RS18530at 3846.271 kb on + strandat 3846.477 kb on - strandat 3846.634 kb on + strand, within BWI76_RS18535at 3846.928 kb on + strand, within BWI76_RS18535at 3847.511 kb on - strand, within BWI76_RS18535at 3847.568 kb on - strand, within BWI76_RS18535at 3847.720 kb on + strand, within BWI76_RS18535at 3847.732 kb on - strandat 3847.737 kb on + strandat 3847.737 kb on - strandat 3847.742 kb on + strandat 3847.745 kb on - strandat 3847.745 kb on - strandat 3847.750 kb on - strandat 3847.849 kb on + strandat 3847.931 kb on + strandat 3847.998 kb on - strandat 3848.033 kb on + strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.041 kb on - strandat 3848.046 kb on + strandat 3848.089 kb on + strand, within BWI76_RS18540at 3848.095 kb on + strand, within BWI76_RS18540at 3848.097 kb on - strand, within BWI76_RS18540at 3848.103 kb on - strand, within BWI76_RS18540at 3848.103 kb on - strand, within BWI76_RS18540at 3848.114 kb on + strand, within BWI76_RS18540at 3848.120 kb on - strand, within BWI76_RS18540at 3848.122 kb on - strand, within BWI76_RS18540at 3848.177 kb on - strand, within BWI76_RS18540at 3848.181 kb on + strand, within BWI76_RS18540at 3848.207 kb on + strand, within BWI76_RS18540at 3848.383 kb on + strandat 3848.399 kb on + strandat 3848.403 kb on - strandat 3848.480 kb on - strandat 3848.480 kb on - strandat 3848.480 kb on - strandat 3848.530 kb on + strandat 3848.530 kb on + strandat 3848.530 kb on + strandat 3848.673 kb on + strand, within BWI76_RS18545at 3848.715 kb on - strand, within BWI76_RS18545at 3848.822 kb on - strand, within BWI76_RS18545

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1 with Iron (II) 0.209 mg/mL
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3,845,541 + BWI76_RS18530 0.13 +0.8
3,845,546 + BWI76_RS18530 0.13 -0.3
3,845,584 - BWI76_RS18530 0.17 -0.1
3,845,608 + BWI76_RS18530 0.20 -0.2
3,845,704 + BWI76_RS18530 0.30 -0.6
3,845,728 - BWI76_RS18530 0.33 +0.1
3,845,886 + BWI76_RS18530 0.50 +0.2
3,845,891 + BWI76_RS18530 0.50 -0.3
3,845,899 - BWI76_RS18530 0.51 +0.4
3,845,964 + BWI76_RS18530 0.58 -1.0
3,845,982 + BWI76_RS18530 0.60 +0.1
3,846,101 + BWI76_RS18530 0.73 -1.0
3,846,194 - BWI76_RS18530 0.83 -0.1
3,846,223 + BWI76_RS18530 0.86 -0.1
3,846,271 + +0.8
3,846,477 - -0.1
3,846,634 + BWI76_RS18535 0.19 -0.1
3,846,928 + BWI76_RS18535 0.38 -0.8
3,847,511 - BWI76_RS18535 0.76 -1.6
3,847,568 - BWI76_RS18535 0.79 -0.2
3,847,720 + BWI76_RS18535 0.89 -1.0
3,847,732 - +0.8
3,847,737 + +0.5
3,847,737 - +0.2
3,847,742 + -0.4
3,847,745 - -0.0
3,847,745 - -0.2
3,847,750 - +0.3
3,847,849 + -0.2
3,847,931 + -0.5
3,847,998 - +0.2
3,848,033 + -0.3
3,848,041 - -0.1
3,848,041 - +0.3
3,848,041 - -0.1
3,848,041 - +0.5
3,848,046 + +0.1
3,848,089 + BWI76_RS18540 0.12 -0.4
3,848,095 + BWI76_RS18540 0.15 -0.4
3,848,097 - BWI76_RS18540 0.16 -0.6
3,848,103 - BWI76_RS18540 0.18 +1.8
3,848,103 - BWI76_RS18540 0.18 -0.2
3,848,114 + BWI76_RS18540 0.22 +0.5
3,848,120 - BWI76_RS18540 0.24 -0.2
3,848,122 - BWI76_RS18540 0.25 +0.8
3,848,177 - BWI76_RS18540 0.47 +0.1
3,848,181 + BWI76_RS18540 0.48 +0.4
3,848,207 + BWI76_RS18540 0.58 -0.2
3,848,383 + -0.2
3,848,399 + -0.4
3,848,403 - +0.3
3,848,480 - +0.2
3,848,480 - +0.1
3,848,480 - +0.9
3,848,530 + +0.3
3,848,530 + +1.1
3,848,530 + -0.6
3,848,673 + BWI76_RS18545 0.16 -2.1
3,848,715 - BWI76_RS18545 0.18 -0.7
3,848,822 - BWI76_RS18545 0.26 -0.2

Or see this region's nucleotide sequence