Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003398

Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Lumazine 5 mM
3,822,014	+		ABIE53_003397	0.36	-0.3
3,822,014	+		ABIE53_003397	0.36	-1.3
3,822,014	+		ABIE53_003397	0.36	-0.2
3,822,015	-		ABIE53_003397	0.36	-0.8
3,822,015	-		ABIE53_003397	0.36	+1.2
3,822,015	-		ABIE53_003397	0.36	+1.0
3,822,016	+		ABIE53_003397	0.37	-1.5
3,822,016	+		ABIE53_003397	0.37	+1.4
3,822,016	+		ABIE53_003397	0.37	+3.0
3,822,017	-		ABIE53_003397	0.37	-0.7
3,822,017	-		ABIE53_003397	0.37	-1.3
3,822,017	-		ABIE53_003397	0.37	+1.0
3,822,017	-		ABIE53_003397	0.37	-1.1
3,822,047	-		ABIE53_003397	0.40	-0.3
3,822,092	+		ABIE53_003397	0.46	-1.8
3,822,092	+		ABIE53_003397	0.46	-1.1
3,822,092	+		ABIE53_003397	0.46	-0.9
3,822,092	+		ABIE53_003397	0.46	+1.0
3,822,093	-		ABIE53_003397	0.46	+0.6
3,822,093	-		ABIE53_003397	0.46	+1.7
3,822,093	-		ABIE53_003397	0.46	+1.3
3,822,093	-		ABIE53_003397	0.46	+2.3
3,822,093	-		ABIE53_003397	0.46	+0.4
3,822,227	+		ABIE53_003397	0.63	-0.9
3,822,433	+		ABIE53_003397	0.90	+0.9
3,822,434	-				-0.4
3,822,434	-				+1.4
3,822,565	+				+1.0
3,822,565	+				-1.1
3,822,604	+				+0.8
3,822,631	+				+0.3
3,822,631	+				-0.7
3,822,632	-				+1.6
3,822,721	+				+1.1
3,822,755	+				-1.3
3,822,761	+				-1.8
3,822,761	+				+0.5
3,822,761	+				+2.2
3,822,762	-				-1.9
3,822,762	-				-1.5
3,822,762	-				-2.4
3,822,762	-				-1.0
3,822,762	-				-0.6
3,822,863	+				-0.0
3,822,863	+				-2.2
3,822,863	+				-1.3
3,822,864	-				-4.1
3,822,864	-				+1.0
3,822,864	-				-3.9
3,822,864	-				+0.4
3,822,864	-				-1.3
3,822,864	-				-3.2
3,822,864	-				-0.3
3,822,864	-				-2.3
3,822,894	+				-0.0
3,822,894	+				-3.2
3,822,954	-		ABIE53_003398	0.13	-1.4
3,823,091	+		ABIE53_003398	0.27	-1.9
3,823,091	+		ABIE53_003398	0.27	-0.6
3,823,092	-		ABIE53_003398	0.27	-0.6
3,823,092	-		ABIE53_003398	0.27	+2.0
3,823,092	-		ABIE53_003398	0.27	-4.2
3,823,106	+		ABIE53_003398	0.29	-1.7
3,823,226	+		ABIE53_003398	0.41	-2.6
3,823,307	+		ABIE53_003398	0.50	-0.3
3,823,307	+		ABIE53_003398	0.50	+2.0
3,823,307	+		ABIE53_003398	0.50	-1.7
3,823,308	-		ABIE53_003398	0.50	-2.1
3,823,424	+		ABIE53_003398	0.62	-0.0
3,823,424	+		ABIE53_003398	0.62	-0.6
3,823,425	-		ABIE53_003398	0.62	-1.9
3,823,425	-		ABIE53_003398	0.62	-1.3
3,823,425	-		ABIE53_003398	0.62	-0.3
3,823,425	-		ABIE53_003398	0.62	-0.0
3,823,426	+		ABIE53_003398	0.62	-2.9
3,823,426	+		ABIE53_003398	0.62	-1.7
3,823,426	+		ABIE53_003398	0.62	-2.8
3,823,426	+		ABIE53_003398	0.62	-0.3
3,823,426	+		ABIE53_003398	0.62	-2.1
3,823,426	+		ABIE53_003398	0.62	+0.4
3,823,426	+		ABIE53_003398	0.62	-1.3
3,823,426	+		ABIE53_003398	0.62	-1.2
3,823,426	+		ABIE53_003398	0.62	-2.1
3,823,426	+		ABIE53_003398	0.62	+0.4
3,823,426	+		ABIE53_003398	0.62	-0.6
3,823,427	-		ABIE53_003398	0.62	-4.5
3,823,427	-		ABIE53_003398	0.62	-0.3
3,823,427	-		ABIE53_003398	0.62	-1.2
3,823,427	-		ABIE53_003398	0.62	-1.7
3,823,427	-		ABIE53_003398	0.62	-0.0
3,823,427	-		ABIE53_003398	0.62	-0.0
3,823,427	-		ABIE53_003398	0.62	-2.4
3,823,562	+		ABIE53_003398	0.76	-1.0
3,823,562	+		ABIE53_003398	0.76	+0.6
3,823,562	+		ABIE53_003398	0.76	-3.7
3,823,563	-		ABIE53_003398	0.76	+1.0
3,823,563	-		ABIE53_003398	0.76	-0.3
3,823,563	-		ABIE53_003398	0.76	-1.2
3,823,563	-		ABIE53_003398	0.76	-0.3
3,823,563	-		ABIE53_003398	0.76	-3.8
3,823,563	-		ABIE53_003398	0.76	-1.3
3,823,563	-		ABIE53_003398	0.76	-0.8
3,823,563	-		ABIE53_003398	0.76	-0.8
3,823,563	-		ABIE53_003398	0.76	-1.8
3,823,564	+		ABIE53_003398	0.76	-1.2
3,823,564	+		ABIE53_003398	0.76	-2.8
3,823,564	+		ABIE53_003398	0.76	-1.9
3,823,565	-		ABIE53_003398	0.77	-2.2
3,823,565	-		ABIE53_003398	0.77	-1.3
3,823,565	-		ABIE53_003398	0.77	-1.3
3,823,670	+		ABIE53_003398	0.88	-0.8
3,823,670	+		ABIE53_003398	0.88	-2.3
3,823,670	+		ABIE53_003398	0.88	-2.2
3,823,670	+		ABIE53_003398	0.88	-0.3
3,823,670	+		ABIE53_003398	0.88	+2.0
3,823,671	-		ABIE53_003398	0.88	-1.5
3,823,671	-		ABIE53_003398	0.88	-0.3
3,823,671	-		ABIE53_003398	0.88	+1.0
3,823,671	-		ABIE53_003398	0.88	-2.1
3,823,671	-		ABIE53_003398	0.88	-0.6
3,823,671	-		ABIE53_003398	0.88	-1.5
3,823,817	-				-0.0
3,824,098	+		ABIE53_003399	0.32	-0.3
3,824,098	+		ABIE53_003399	0.32	-1.8
3,824,098	+		ABIE53_003399	0.32	-1.8
3,824,099	-		ABIE53_003399	0.32	-1.0
3,824,099	-		ABIE53_003399	0.32	-1.8
3,824,099	-		ABIE53_003399	0.32	-1.0
3,824,099	-		ABIE53_003399	0.32	-0.5
3,824,099	-		ABIE53_003399	0.32	+1.0
3,824,099	-		ABIE53_003399	0.32	-2.0
3,824,100	+		ABIE53_003399	0.32	-2.2
3,824,101	-		ABIE53_003399	0.32	-1.2
3,824,497	+		ABIE53_003399	0.72	-2.0
3,824,497	+		ABIE53_003399	0.72	-2.2
3,824,569	+		ABIE53_003399	0.80	-1.5
3,824,569	+		ABIE53_003399	0.80	+1.0
3,824,569	+		ABIE53_003399	0.80	-1.8
3,824,569	+		ABIE53_003399	0.80	-1.5
3,824,570	-		ABIE53_003399	0.80	-0.8
3,824,570	-		ABIE53_003399	0.80	-2.9
3,824,769	-				-1.9