Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002458

Experiment: RCH2_defined_glucose_5mM with Lumazine 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Lumazine 5 mM
2,760,468	+		ABIE53_002457	0.31	+0.3
2,760,469	-		ABIE53_002457	0.31	+1.9
2,760,723	+		ABIE53_002457	0.52	-1.9
2,760,723	+		ABIE53_002457	0.52	-1.4
2,760,723	+		ABIE53_002457	0.52	-1.5
2,760,930	+		ABIE53_002457	0.68	-1.5
2,760,930	+		ABIE53_002457	0.68	-0.4
2,760,930	+		ABIE53_002457	0.68	-0.3
2,760,931	-		ABIE53_002457	0.68	-1.5
2,760,931	-		ABIE53_002457	0.68	-1.4
2,760,931	-		ABIE53_002457	0.68	-1.1
2,760,931	-		ABIE53_002457	0.68	-0.9
2,760,931	-		ABIE53_002457	0.68	+0.5
2,760,931	-		ABIE53_002457	0.68	-0.2
2,760,948	+		ABIE53_002457	0.69	-1.1
2,760,948	+		ABIE53_002457	0.69	+0.0
2,760,948	+		ABIE53_002457	0.69	+0.9
2,760,949	-		ABIE53_002457	0.69	+0.3
2,760,949	-		ABIE53_002457	0.69	-0.7
2,761,061	+		ABIE53_002457	0.78	-0.7
2,761,207	-		ABIE53_002457	0.90	-1.7
2,761,207	-		ABIE53_002457	0.90	+0.6
2,761,332	+				-4.4
2,761,332	+				-0.8
2,761,332	+				-0.5
2,761,332	+				+0.9
2,761,333	-				-0.4
2,761,333	-				-1.5
2,761,333	-				-2.3
2,761,333	-				-0.7
2,761,333	-				-2.1
2,761,333	-				-0.2
2,761,333	-				+1.6
2,761,351	+				+0.8
2,761,351	+				-1.8
2,761,351	+				+1.6
2,761,351	+				+1.9
2,761,352	-				-0.7
2,761,352	-				-1.5
2,761,352	-				-0.2
2,761,352	-				-0.6
2,761,352	-				+0.6
2,761,352	-				+3.7
2,761,352	-				+0.2
2,761,774	+		ABIE53_002458	0.26	+0.2
2,761,775	-		ABIE53_002458	0.26	+0.6
2,761,775	-		ABIE53_002458	0.26	+0.1
2,761,775	-		ABIE53_002458	0.26	+1.9
2,761,898	-		ABIE53_002458	0.34	-0.0
2,761,898	-		ABIE53_002458	0.34	-0.4
2,762,233	+		ABIE53_002458	0.55	+0.4
2,762,233	+		ABIE53_002458	0.55	-0.3
2,762,234	-		ABIE53_002458	0.56	+0.1
2,762,234	-		ABIE53_002458	0.56	-0.1
2,762,234	-		ABIE53_002458	0.56	-0.7
2,762,234	-		ABIE53_002458	0.56	-1.8
2,762,234	-		ABIE53_002458	0.56	+0.9
2,762,252	+		ABIE53_002458	0.57	+0.6
2,762,253	-		ABIE53_002458	0.57	-1.8
2,762,386	+		ABIE53_002458	0.65	-0.7
2,762,386	+		ABIE53_002458	0.65	-0.7
2,762,387	-		ABIE53_002458	0.65	-1.8
2,762,443	+		ABIE53_002458	0.69	-1.5
2,762,460	+		ABIE53_002458	0.70	-1.1
2,762,460	+		ABIE53_002458	0.70	-1.0
2,762,460	+		ABIE53_002458	0.70	-0.3
2,762,460	+		ABIE53_002458	0.70	-1.4
2,762,460	+		ABIE53_002458	0.70	-0.9
2,762,461	-		ABIE53_002458	0.70	-1.0
2,762,461	-		ABIE53_002458	0.70	-1.7
2,762,464	+		ABIE53_002458	0.70	-0.5
2,762,464	+		ABIE53_002458	0.70	-1.0
2,762,464	+		ABIE53_002458	0.70	-2.4
2,762,464	+		ABIE53_002458	0.70	-0.4
2,762,464	+		ABIE53_002458	0.70	-1.7
2,762,464	+		ABIE53_002458	0.70	+0.9
2,762,465	-		ABIE53_002458	0.70	-0.6
2,762,465	-		ABIE53_002458	0.70	+0.9
2,762,465	-		ABIE53_002458	0.70	+0.7
2,762,465	-		ABIE53_002458	0.70	-0.4
2,762,655	+		ABIE53_002458	0.82	-2.3
2,762,655	+		ABIE53_002458	0.82	+1.5
2,762,655	+		ABIE53_002458	0.82	-0.7
2,762,655	+		ABIE53_002458	0.82	-1.7
2,762,655	+		ABIE53_002458	0.82	-0.1
2,762,656	-		ABIE53_002458	0.83	+0.4
2,762,656	-		ABIE53_002458	0.83	+0.6
2,762,656	-		ABIE53_002458	0.83	-1.3
2,762,656	-		ABIE53_002458	0.83	-1.1
2,762,656	-		ABIE53_002458	0.83	-0.7
2,762,656	-		ABIE53_002458	0.83	-0.1
2,762,696	-		ABIE53_002458	0.85	-1.8
2,762,696	-		ABIE53_002458	0.85	+1.6
2,762,696	-		ABIE53_002458	0.85	+1.2
2,762,696	-		ABIE53_002458	0.85	-0.4
2,762,762	-		ABIE53_002458	0.89	-2.3
2,763,117	+				-1.0
2,763,118	-				+0.2
2,763,118	-				-0.2
2,763,175	+		ABIE53_002459	0.13	+0.6
2,763,232	+		ABIE53_002459	0.17	+0.7
2,763,232	+		ABIE53_002459	0.17	+1.9
2,763,232	+		ABIE53_002459	0.17	-0.4
2,763,232	+		ABIE53_002459	0.17	-0.7
2,763,233	-		ABIE53_002459	0.17	-0.7
2,763,233	-		ABIE53_002459	0.17	+0.9
2,763,233	-		ABIE53_002459	0.17	-0.5
2,763,233	-		ABIE53_002459	0.17	-2.3
2,763,233	-		ABIE53_002459	0.17	+0.1
2,763,233	-		ABIE53_002459	0.17	-0.1
2,763,233	-		ABIE53_002459	0.17	+0.7
2,763,234	-		ABIE53_002459	0.17	-1.1
2,763,295	+		ABIE53_002459	0.22	-0.7
2,763,295	+		ABIE53_002459	0.22	+0.8
2,763,295	+		ABIE53_002459	0.22	+1.6
2,763,295	+		ABIE53_002459	0.22	+1.9
2,763,295	+		ABIE53_002459	0.22	+0.7
2,763,296	-		ABIE53_002459	0.22	+0.3
2,763,296	-		ABIE53_002459	0.22	-0.8
2,763,296	-		ABIE53_002459	0.22	-0.3
2,763,296	-		ABIE53_002459	0.22	+4.2
2,763,296	-		ABIE53_002459	0.22	-1.4
2,763,372	+		ABIE53_002459	0.27	+0.3
2,763,406	+		ABIE53_002459	0.29	-0.6
2,763,406	+		ABIE53_002459	0.29	-2.8
2,763,406	+		ABIE53_002459	0.29	-0.6
2,763,406	+		ABIE53_002459	0.29	-0.7
2,763,406	+		ABIE53_002459	0.29	+0.3
2,763,406	+		ABIE53_002459	0.29	-0.7
2,763,406	+		ABIE53_002459	0.29	-0.4
2,763,406	+		ABIE53_002459	0.29	+0.3
2,763,407	-		ABIE53_002459	0.29	-1.1
2,763,407	-		ABIE53_002459	0.29	-0.4
2,763,421	+		ABIE53_002459	0.30	+0.7
2,763,422	-		ABIE53_002459	0.30	-2.5
2,763,539	-		ABIE53_002459	0.38	+0.7
2,763,539	-		ABIE53_002459	0.38	-1.1
2,763,539	-		ABIE53_002459	0.38	-0.1
2,763,539	-		ABIE53_002459	0.38	-0.5
2,763,539	-		ABIE53_002459	0.38	+1.2
2,763,539	-		ABIE53_002459	0.38	-0.5
2,763,539	-		ABIE53_002459	0.38	-0.3
2,763,542	+		ABIE53_002459	0.38	-3.1
2,763,542	+		ABIE53_002459	0.38	-1.0
2,763,542	+		ABIE53_002459	0.38	+0.3
2,763,543	-		ABIE53_002459	0.39	-0.5
2,763,543	-		ABIE53_002459	0.39	-1.5
2,763,643	+		ABIE53_002459	0.45	+0.0
2,763,643	+		ABIE53_002459	0.45	-1.9
2,763,643	+		ABIE53_002459	0.45	+0.9
2,763,644	-		ABIE53_002459	0.45	+0.5
2,763,678	+		ABIE53_002459	0.48	-0.9
2,763,757	+		ABIE53_002459	0.53	-1.9
2,763,757	+		ABIE53_002459	0.53	+1.9
2,763,758	-		ABIE53_002459	0.53	+3.5
2,763,775	-		ABIE53_002459	0.55	-0.1
2,763,796	-		ABIE53_002459	0.56	+0.3