Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4986 and Psyr_4987 are separated by 6 nucleotides Psyr_4987 and Psyr_4988 are separated by 162 nucleotides Psyr_4988 and Psyr_4989 overlap by 13 nucleotides Psyr_4989 and Psyr_4990 are separated by 246 nucleotides
Psyr_4986: Psyr_4986 - YD repeat protein, at 5,911,246 to 5,915,475
_4986
Psyr_4987: Psyr_4987 - conserved hypothetical protein, at 5,915,482 to 5,916,090
_4987
Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695
_4988
Psyr_4989: Psyr_4989 - hypothetical protein, at 5,917,683 to 5,918,153
_4989
Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003
_4990
Position (kb) 5916
5917
5918 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5915.277 kb on + strand at 5915.278 kb on - strand at 5915.278 kb on - strand at 5915.310 kb on - strand at 5915.310 kb on - strand at 5915.331 kb on + strand at 5915.367 kb on - strand at 5915.407 kb on - strand at 5916.093 kb on - strand at 5916.093 kb on - strand at 5916.137 kb on - strand at 5916.157 kb on - strand at 5916.173 kb on + strand at 5916.174 kb on - strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.266 kb on + strand at 5916.267 kb on - strand at 5916.382 kb on + strand at 5916.382 kb on + strand at 5916.382 kb on + strand at 5916.434 kb on + strand, within Psyr_4988 at 5916.435 kb on - strand, within Psyr_4988 at 5916.435 kb on - strand, within Psyr_4988 at 5916.844 kb on - strand, within Psyr_4988 at 5916.858 kb on + strand, within Psyr_4988 at 5916.858 kb on + strand, within Psyr_4988 at 5916.858 kb on + strand, within Psyr_4988 at 5917.037 kb on + strand, within Psyr_4988 at 5917.269 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.323 kb on - strand, within Psyr_4988 at 5917.344 kb on - strand, within Psyr_4988 at 5917.344 kb on - strand, within Psyr_4988 at 5917.423 kb on + strand, within Psyr_4988 at 5917.423 kb on + strand, within Psyr_4988 at 5917.423 kb on + strand, within Psyr_4988 at 5917.434 kb on + strand, within Psyr_4988 at 5917.487 kb on + strand, within Psyr_4988 at 5917.515 kb on + strand, within Psyr_4988 at 5917.527 kb on + strand, within Psyr_4988 at 5917.543 kb on - strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.549 kb on - strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.577 kb on + strand at 5917.604 kb on + strand at 5917.650 kb on + strand at 5917.650 kb on + strand at 5917.650 kb on + strand at 5917.651 kb on - strand at 5917.651 kb on - strand at 5917.658 kb on + strand at 5917.658 kb on + strand at 5917.659 kb on - strand at 5917.662 kb on + strand at 5917.737 kb on + strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.767 kb on - strand, within Psyr_4989 at 5917.807 kb on + strand, within Psyr_4989 at 5917.835 kb on - strand, within Psyr_4989 at 5917.907 kb on - strand, within Psyr_4989 at 5918.004 kb on + strand, within Psyr_4989 at 5918.025 kb on + strand, within Psyr_4989 at 5918.040 kb on + strand, within Psyr_4989 at 5918.076 kb on + strand, within Psyr_4989 at 5918.287 kb on + strand at 5918.332 kb on - strand at 5918.338 kb on - strand at 5918.361 kb on + strand at 5918.397 kb on - strand at 5918.397 kb on - strand at 5918.412 kb on - strand at 5918.430 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.664 kb on + strand, within Psyr_4990 at 5918.664 kb on + strand, within Psyr_4990
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 5,915,277 + +0.7 5,915,278 - +1.6 5,915,278 - +0.4 5,915,310 - -0.0 5,915,310 - -1.3 5,915,331 + +0.3 5,915,367 - -0.1 5,915,407 - +0.0 5,916,093 - -0.3 5,916,093 - +2.6 5,916,137 - +0.2 5,916,157 - +1.0 5,916,173 + +1.0 5,916,174 - +3.0 5,916,250 + -0.4 5,916,250 + -0.0 5,916,250 + +0.5 5,916,250 + +0.7 5,916,250 + -1.8 5,916,250 + -1.6 5,916,250 + -0.2 5,916,250 + +1.2 5,916,251 - +0.8 5,916,251 - +0.7 5,916,251 - +0.3 5,916,251 - +1.1 5,916,251 - +0.3 5,916,251 - +0.5 5,916,251 - +0.2 5,916,251 - -0.2 5,916,251 - +1.1 5,916,251 - +0.8 5,916,251 - +0.3 5,916,251 - +0.5 5,916,251 - +3.6 5,916,266 + -0.3 5,916,267 - -2.2 5,916,382 + +0.2 5,916,382 + -0.2 5,916,382 + +0.0 5,916,434 + Psyr_4988 0.13 +3.6 5,916,435 - Psyr_4988 0.13 +0.4 5,916,435 - Psyr_4988 0.13 +0.0 5,916,844 - Psyr_4988 0.41 -0.4 5,916,858 + Psyr_4988 0.42 -2.6 5,916,858 + Psyr_4988 0.42 +0.6 5,916,858 + Psyr_4988 0.42 -0.4 5,917,037 + Psyr_4988 0.54 -0.0 5,917,269 + Psyr_4988 0.70 +0.4 5,917,318 + Psyr_4988 0.74 +1.0 5,917,318 + Psyr_4988 0.74 +0.5 5,917,318 + Psyr_4988 0.74 -1.0 5,917,318 + Psyr_4988 0.74 +1.8 5,917,318 + Psyr_4988 0.74 -0.8 5,917,318 + Psyr_4988 0.74 -3.9 5,917,319 - Psyr_4988 0.74 -0.5 5,917,319 - Psyr_4988 0.74 -0.1 5,917,323 - Psyr_4988 0.74 -0.6 5,917,344 - Psyr_4988 0.76 +0.1 5,917,344 - Psyr_4988 0.76 -2.2 5,917,423 + Psyr_4988 0.81 -0.2 5,917,423 + Psyr_4988 0.81 -0.3 5,917,423 + Psyr_4988 0.81 +0.9 5,917,434 + Psyr_4988 0.82 -0.1 5,917,487 + Psyr_4988 0.86 +0.2 5,917,515 + Psyr_4988 0.87 -0.1 5,917,527 + Psyr_4988 0.88 -1.4 5,917,543 - Psyr_4988 0.89 -1.5 5,917,548 + Psyr_4988 0.90 +0.7 5,917,548 + Psyr_4988 0.90 +1.0 5,917,549 - Psyr_4988 0.90 +0.1 5,917,550 + Psyr_4988 0.90 +0.1 5,917,550 + Psyr_4988 0.90 -0.3 5,917,550 + Psyr_4988 0.90 -1.4 5,917,550 + Psyr_4988 0.90 +0.1 5,917,550 + Psyr_4988 0.90 +0.8 5,917,550 + Psyr_4988 0.90 +0.3 5,917,551 - -1.7 5,917,551 - +0.7 5,917,577 + +1.0 5,917,604 + +0.0 5,917,650 + +1.0 5,917,650 + +2.0 5,917,650 + -0.1 5,917,651 - +0.4 5,917,651 - +0.3 5,917,658 + +0.4 5,917,658 + +1.4 5,917,659 - -0.1 5,917,662 + -0.2 5,917,737 + Psyr_4989 0.11 -0.2 5,917,738 - Psyr_4989 0.12 -0.7 5,917,766 + Psyr_4989 0.18 -0.5 5,917,767 - Psyr_4989 0.18 +1.2 5,917,807 + Psyr_4989 0.26 -0.8 5,917,835 - Psyr_4989 0.32 -0.4 5,917,907 - Psyr_4989 0.48 +0.2 5,918,004 + Psyr_4989 0.68 +0.4 5,918,025 + Psyr_4989 0.73 -0.1 5,918,040 + Psyr_4989 0.76 +1.5 5,918,076 + Psyr_4989 0.83 -0.4 5,918,287 + -2.7 5,918,332 - +0.8 5,918,338 - -0.5 5,918,361 + -1.1 5,918,397 - +0.3 5,918,397 - +0.7 5,918,412 - -2.2 5,918,430 + +0.1 5,918,487 + +0.2 5,918,487 + -0.7 5,918,487 + +0.1 5,918,488 - +0.5 5,918,488 - +0.7 5,918,488 - +0.2 5,918,488 - -1.0 5,918,488 - +0.7 5,918,488 - -1.6 5,918,488 - +0.0 5,918,488 - -1.2 5,918,488 - +0.6 5,918,488 - +0.3 5,918,488 - -0.2 5,918,664 + Psyr_4990 0.10 -0.3 5,918,664 + Psyr_4990 0.10 -0.1
Or see this region's nucleotide sequence