Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4447 and Psyr_4448 are separated by 0 nucleotides Psyr_4448 and Psyr_4449 are separated by 177 nucleotides Psyr_4449 and Psyr_4450 are separated by 223 nucleotides
Psyr_4447: Psyr_4447 - hypothetical protein, at 5,313,031 to 5,313,366
_4447
Psyr_4448: Psyr_4448 - Ferritin and Dps, at 5,313,367 to 5,313,909
_4448
Psyr_4449: Psyr_4449 - AsmA, at 5,314,087 to 5,316,153
_4449
Psyr_4450: Psyr_4450 - transcriptional regulator, TetR family, at 5,316,377 to 5,317,009
_4450
Position (kb) 5314
5315
5316
5317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5313.164 kb on + strand, within Psyr_4447 at 5313.164 kb on + strand, within Psyr_4447 at 5313.165 kb on - strand, within Psyr_4447 at 5313.177 kb on + strand, within Psyr_4447 at 5313.225 kb on + strand, within Psyr_4447 at 5313.225 kb on + strand, within Psyr_4447 at 5313.225 kb on + strand, within Psyr_4447 at 5313.226 kb on - strand, within Psyr_4447 at 5313.231 kb on + strand, within Psyr_4447 at 5313.232 kb on - strand, within Psyr_4447 at 5313.232 kb on - strand, within Psyr_4447 at 5313.324 kb on + strand, within Psyr_4447 at 5313.324 kb on + strand, within Psyr_4447 at 5313.324 kb on + strand, within Psyr_4447 at 5313.364 kb on + strand at 5313.364 kb on + strand at 5313.365 kb on - strand at 5313.365 kb on - strand at 5313.365 kb on - strand at 5313.365 kb on - strand at 5313.404 kb on + strand at 5313.404 kb on + strand at 5313.404 kb on + strand at 5313.405 kb on - strand at 5313.405 kb on - strand at 5313.405 kb on - strand at 5313.405 kb on - strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.408 kb on + strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.409 kb on - strand at 5313.463 kb on + strand, within Psyr_4448 at 5313.464 kb on - strand, within Psyr_4448 at 5313.464 kb on - strand, within Psyr_4448 at 5313.539 kb on - strand, within Psyr_4448 at 5313.550 kb on + strand, within Psyr_4448 at 5313.551 kb on - strand, within Psyr_4448 at 5313.551 kb on - strand, within Psyr_4448 at 5313.551 kb on - strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.553 kb on + strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.554 kb on - strand, within Psyr_4448 at 5313.648 kb on + strand, within Psyr_4448 at 5313.649 kb on - strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.715 kb on + strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.716 kb on - strand, within Psyr_4448 at 5313.749 kb on - strand, within Psyr_4448 at 5313.749 kb on - strand, within Psyr_4448 at 5313.805 kb on + strand, within Psyr_4448 at 5313.805 kb on + strand, within Psyr_4448 at 5313.964 kb on + strand at 5313.964 kb on + strand at 5313.964 kb on + strand at 5314.044 kb on + strand at 5314.044 kb on + strand at 5314.045 kb on - strand at 5314.088 kb on + strand at 5314.088 kb on + strand at 5314.088 kb on + strand at 5314.089 kb on - strand at 5314.089 kb on - strand at 5314.201 kb on + strand at 5314.201 kb on + strand at 5314.202 kb on - strand at 5314.202 kb on - strand at 5314.202 kb on - strand at 5314.243 kb on + strand at 5314.295 kb on + strand, within Psyr_4449 at 5314.295 kb on + strand, within Psyr_4449 at 5314.295 kb on + strand, within Psyr_4449 at 5314.295 kb on + strand, within Psyr_4449 at 5314.296 kb on - strand, within Psyr_4449 at 5314.296 kb on - strand, within Psyr_4449 at 5314.296 kb on - strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.394 kb on + strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.395 kb on - strand, within Psyr_4449 at 5314.398 kb on + strand, within Psyr_4449 at 5314.399 kb on - strand, within Psyr_4449 at 5314.399 kb on - strand, within Psyr_4449 at 5314.520 kb on + strand, within Psyr_4449 at 5314.520 kb on + strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.521 kb on - strand, within Psyr_4449 at 5314.725 kb on + strand, within Psyr_4449 at 5314.783 kb on - strand, within Psyr_4449 at 5314.829 kb on - strand, within Psyr_4449 at 5314.865 kb on + strand, within Psyr_4449 at 5314.866 kb on - strand, within Psyr_4449 at 5314.866 kb on - strand, within Psyr_4449 at 5315.237 kb on + strand, within Psyr_4449 at 5315.238 kb on - strand, within Psyr_4449 at 5315.238 kb on - strand, within Psyr_4449 at 5315.238 kb on - strand, within Psyr_4449 at 5315.507 kb on + strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.508 kb on - strand, within Psyr_4449 at 5315.802 kb on + strand, within Psyr_4449 at 5316.091 kb on + strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.092 kb on - strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.093 kb on + strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.094 kb on - strand at 5316.198 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.209 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.280 kb on + strand at 5316.281 kb on - strand at 5316.281 kb on - strand at 5316.283 kb on + strand at 5316.283 kb on + strand at 5316.325 kb on - strand at 5316.325 kb on - strand at 5316.339 kb on - strand at 5316.339 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.356 kb on - strand at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.657 kb on + strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.658 kb on - strand, within Psyr_4450 at 5316.716 kb on + strand, within Psyr_4450 at 5316.717 kb on - strand, within Psyr_4450 at 5317.024 kb on + strand at 5317.025 kb on - strand at 5317.055 kb on - strand at 5317.063 kb on + strand at 5317.064 kb on - strand at 5317.092 kb on + strand at 5317.093 kb on - strand at 5317.119 kb on - strand at 5317.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 5,313,164 + Psyr_4447 0.40 -0.3 5,313,164 + Psyr_4447 0.40 -1.9 5,313,165 - Psyr_4447 0.40 -0.9 5,313,177 + Psyr_4447 0.43 +0.0 5,313,225 + Psyr_4447 0.58 -0.1 5,313,225 + Psyr_4447 0.58 -1.4 5,313,225 + Psyr_4447 0.58 -0.0 5,313,226 - Psyr_4447 0.58 +0.4 5,313,231 + Psyr_4447 0.60 -0.2 5,313,232 - Psyr_4447 0.60 +0.4 5,313,232 - Psyr_4447 0.60 +0.4 5,313,324 + Psyr_4447 0.87 -0.6 5,313,324 + Psyr_4447 0.87 -1.4 5,313,324 + Psyr_4447 0.87 -0.5 5,313,364 + -0.1 5,313,364 + -2.2 5,313,365 - -0.0 5,313,365 - +0.7 5,313,365 - -0.9 5,313,365 - -2.7 5,313,404 + -0.5 5,313,404 + -0.2 5,313,404 + -0.2 5,313,405 - +1.2 5,313,405 - -2.0 5,313,405 - +0.8 5,313,405 - +0.0 5,313,408 + +0.9 5,313,408 + -0.4 5,313,408 + -0.5 5,313,408 + +0.4 5,313,408 + +1.2 5,313,408 + +0.4 5,313,409 - +0.6 5,313,409 - -0.0 5,313,409 - -0.5 5,313,409 - +0.5 5,313,409 - +1.1 5,313,409 - +0.2 5,313,463 + Psyr_4448 0.18 -0.9 5,313,464 - Psyr_4448 0.18 +0.2 5,313,464 - Psyr_4448 0.18 +1.7 5,313,539 - Psyr_4448 0.32 -0.0 5,313,550 + Psyr_4448 0.34 +0.5 5,313,551 - Psyr_4448 0.34 +3.4 5,313,551 - Psyr_4448 0.34 +0.4 5,313,551 - Psyr_4448 0.34 -0.5 5,313,553 + Psyr_4448 0.34 +0.2 5,313,553 + Psyr_4448 0.34 -0.3 5,313,553 + Psyr_4448 0.34 +1.5 5,313,553 + Psyr_4448 0.34 +0.8 5,313,553 + Psyr_4448 0.34 -0.8 5,313,553 + Psyr_4448 0.34 +1.2 5,313,553 + Psyr_4448 0.34 +0.6 5,313,553 + Psyr_4448 0.34 -0.2 5,313,553 + Psyr_4448 0.34 +0.4 5,313,553 + Psyr_4448 0.34 -0.2 5,313,553 + Psyr_4448 0.34 -2.7 5,313,553 + Psyr_4448 0.34 -0.2 5,313,553 + Psyr_4448 0.34 +0.3 5,313,553 + Psyr_4448 0.34 +0.2 5,313,553 + Psyr_4448 0.34 -0.2 5,313,553 + Psyr_4448 0.34 +0.5 5,313,553 + Psyr_4448 0.34 -0.6 5,313,553 + Psyr_4448 0.34 -0.3 5,313,553 + Psyr_4448 0.34 +1.0 5,313,553 + Psyr_4448 0.34 +0.1 5,313,553 + Psyr_4448 0.34 +1.5 5,313,553 + Psyr_4448 0.34 -2.5 5,313,553 + Psyr_4448 0.34 -0.5 5,313,554 - Psyr_4448 0.34 +2.4 5,313,554 - Psyr_4448 0.34 +0.8 5,313,554 - Psyr_4448 0.34 +0.3 5,313,554 - Psyr_4448 0.34 -1.7 5,313,554 - Psyr_4448 0.34 -0.6 5,313,554 - Psyr_4448 0.34 -1.2 5,313,554 - Psyr_4448 0.34 +0.4 5,313,554 - Psyr_4448 0.34 +1.7 5,313,554 - Psyr_4448 0.34 -1.8 5,313,554 - Psyr_4448 0.34 +1.2 5,313,554 - Psyr_4448 0.34 +0.2 5,313,554 - Psyr_4448 0.34 -0.5 5,313,554 - Psyr_4448 0.34 +0.4 5,313,554 - Psyr_4448 0.34 +0.4 5,313,554 - Psyr_4448 0.34 -0.2 5,313,554 - Psyr_4448 0.34 -1.2 5,313,554 - Psyr_4448 0.34 +0.7 5,313,554 - Psyr_4448 0.34 +0.5 5,313,554 - Psyr_4448 0.34 -0.8 5,313,554 - Psyr_4448 0.34 -0.5 5,313,554 - Psyr_4448 0.34 -0.4 5,313,648 + Psyr_4448 0.52 -0.0 5,313,649 - Psyr_4448 0.52 -0.7 5,313,715 + Psyr_4448 0.64 +0.5 5,313,715 + Psyr_4448 0.64 +0.3 5,313,715 + Psyr_4448 0.64 +0.7 5,313,715 + Psyr_4448 0.64 -0.7 5,313,716 - Psyr_4448 0.64 -0.8 5,313,716 - Psyr_4448 0.64 +0.1 5,313,716 - Psyr_4448 0.64 -0.7 5,313,716 - Psyr_4448 0.64 -0.9 5,313,716 - Psyr_4448 0.64 +0.0 5,313,716 - Psyr_4448 0.64 -0.3 5,313,749 - Psyr_4448 0.70 +0.4 5,313,749 - Psyr_4448 0.70 +0.7 5,313,805 + Psyr_4448 0.81 -0.6 5,313,805 + Psyr_4448 0.81 +1.5 5,313,964 + +1.9 5,313,964 + +0.2 5,313,964 + -0.2 5,314,044 + +0.4 5,314,044 + +0.8 5,314,045 - -0.6 5,314,088 + +0.0 5,314,088 + -0.8 5,314,088 + -0.5 5,314,089 - +0.2 5,314,089 - +0.5 5,314,201 + +0.4 5,314,201 + +0.8 5,314,202 - -0.0 5,314,202 - -0.3 5,314,202 - -0.4 5,314,243 + +0.2 5,314,295 + Psyr_4449 0.10 +1.5 5,314,295 + Psyr_4449 0.10 -0.2 5,314,295 + Psyr_4449 0.10 -1.6 5,314,295 + Psyr_4449 0.10 -1.3 5,314,296 - Psyr_4449 0.10 +0.7 5,314,296 - Psyr_4449 0.10 +0.8 5,314,296 - Psyr_4449 0.10 -0.9 5,314,394 + Psyr_4449 0.15 -1.2 5,314,394 + Psyr_4449 0.15 -0.0 5,314,394 + Psyr_4449 0.15 -0.0 5,314,394 + Psyr_4449 0.15 -0.3 5,314,394 + Psyr_4449 0.15 -1.1 5,314,394 + Psyr_4449 0.15 +0.3 5,314,394 + Psyr_4449 0.15 -0.6 5,314,394 + Psyr_4449 0.15 +2.5 5,314,394 + Psyr_4449 0.15 -0.9 5,314,394 + Psyr_4449 0.15 -2.3 5,314,394 + Psyr_4449 0.15 -0.1 5,314,395 - Psyr_4449 0.15 +0.5 5,314,395 - Psyr_4449 0.15 -0.5 5,314,395 - Psyr_4449 0.15 -0.6 5,314,395 - Psyr_4449 0.15 -0.5 5,314,395 - Psyr_4449 0.15 -1.8 5,314,395 - Psyr_4449 0.15 +1.1 5,314,395 - Psyr_4449 0.15 +0.0 5,314,398 + Psyr_4449 0.15 -1.5 5,314,399 - Psyr_4449 0.15 -0.8 5,314,399 - Psyr_4449 0.15 +0.5 5,314,520 + Psyr_4449 0.21 -1.0 5,314,520 + Psyr_4449 0.21 +1.1 5,314,521 - Psyr_4449 0.21 +0.1 5,314,521 - Psyr_4449 0.21 -0.1 5,314,521 - Psyr_4449 0.21 -0.1 5,314,521 - Psyr_4449 0.21 -0.1 5,314,521 - Psyr_4449 0.21 -0.6 5,314,521 - Psyr_4449 0.21 -2.1 5,314,521 - Psyr_4449 0.21 +0.1 5,314,521 - Psyr_4449 0.21 -0.3 5,314,521 - Psyr_4449 0.21 -0.2 5,314,521 - Psyr_4449 0.21 +0.2 5,314,725 + Psyr_4449 0.31 -0.2 5,314,783 - Psyr_4449 0.34 -0.4 5,314,829 - Psyr_4449 0.36 -0.6 5,314,865 + Psyr_4449 0.38 -0.2 5,314,866 - Psyr_4449 0.38 -0.8 5,314,866 - Psyr_4449 0.38 -1.2 5,315,237 + Psyr_4449 0.56 -0.2 5,315,238 - Psyr_4449 0.56 +0.1 5,315,238 - Psyr_4449 0.56 +0.2 5,315,238 - Psyr_4449 0.56 -0.2 5,315,507 + Psyr_4449 0.69 -0.7 5,315,508 - Psyr_4449 0.69 -0.9 5,315,508 - Psyr_4449 0.69 +0.4 5,315,802 + Psyr_4449 0.83 -0.1 5,316,091 + -0.3 5,316,092 - +0.8 5,316,092 - -1.1 5,316,092 - +0.6 5,316,092 - +0.1 5,316,093 + +0.2 5,316,093 + -0.1 5,316,093 + -0.6 5,316,093 + -0.2 5,316,093 + -0.0 5,316,094 - -0.9 5,316,094 - +0.0 5,316,094 - -0.2 5,316,094 - +2.0 5,316,198 + -0.5 5,316,209 + +0.8 5,316,209 + +1.3 5,316,209 + -2.4 5,316,280 + -1.4 5,316,280 + -0.5 5,316,280 + -1.0 5,316,281 - -3.8 5,316,281 - -0.2 5,316,283 + -0.3 5,316,283 + -2.0 5,316,325 - +0.1 5,316,325 - +0.9 5,316,339 - +0.3 5,316,339 - -0.4 5,316,356 - +0.7 5,316,356 - -0.7 5,316,356 - +0.5 5,316,657 + Psyr_4450 0.44 +0.4 5,316,657 + Psyr_4450 0.44 +0.4 5,316,657 + Psyr_4450 0.44 -0.2 5,316,658 - Psyr_4450 0.44 +0.3 5,316,658 - Psyr_4450 0.44 +2.4 5,316,658 - Psyr_4450 0.44 -0.2 5,316,658 - Psyr_4450 0.44 +0.6 5,316,716 + Psyr_4450 0.54 +0.3 5,316,717 - Psyr_4450 0.54 +0.4 5,317,024 + +0.1 5,317,025 - +1.4 5,317,055 - +0.8 5,317,063 + +0.0 5,317,064 - -0.4 5,317,092 + +1.8 5,317,093 - +0.8 5,317,119 - -0.8 5,317,119 - +0.3
Or see this region's nucleotide sequence