Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4252

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4250 and Psyr_4251 are separated by 13 nucleotidesPsyr_4251 and Psyr_4252 are separated by 14 nucleotidesPsyr_4252 and Psyr_4253 are separated by 344 nucleotides Psyr_4250: Psyr_4250 - Binding-protein-dependent transport systems inner membrane component, at 5,067,720 to 5,068,373 _4250 Psyr_4251: Psyr_4251 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,068,387 to 5,069,280 _4251 Psyr_4252: Psyr_4252 - Binding-protein-dependent transport systems inner membrane component, at 5,069,295 to 5,070,008 _4252 Psyr_4253: Psyr_4253 - bacterial peptide chain release factor 3 (bRF-3), at 5,070,353 to 5,071,936 _4253 Position (kb) 5069 5070 5071Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5068.373 kb on + strandat 5068.388 kb on + strandat 5068.388 kb on + strandat 5068.388 kb on + strandat 5068.388 kb on + strandat 5068.389 kb on - strandat 5068.389 kb on - strandat 5068.544 kb on + strand, within Psyr_4251at 5068.544 kb on + strand, within Psyr_4251at 5068.544 kb on + strand, within Psyr_4251at 5068.544 kb on + strand, within Psyr_4251at 5068.545 kb on - strand, within Psyr_4251at 5068.574 kb on + strand, within Psyr_4251at 5068.574 kb on + strand, within Psyr_4251at 5068.586 kb on + strand, within Psyr_4251at 5068.586 kb on + strand, within Psyr_4251at 5068.586 kb on + strand, within Psyr_4251at 5068.586 kb on + strand, within Psyr_4251at 5068.586 kb on + strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.587 kb on - strand, within Psyr_4251at 5068.646 kb on + strand, within Psyr_4251at 5068.646 kb on + strand, within Psyr_4251at 5068.647 kb on - strand, within Psyr_4251at 5068.647 kb on - strand, within Psyr_4251at 5068.647 kb on - strand, within Psyr_4251at 5068.647 kb on - strand, within Psyr_4251at 5068.647 kb on - strand, within Psyr_4251at 5068.688 kb on + strand, within Psyr_4251at 5068.688 kb on + strand, within Psyr_4251at 5068.688 kb on + strand, within Psyr_4251at 5068.689 kb on - strand, within Psyr_4251at 5068.689 kb on - strand, within Psyr_4251at 5068.742 kb on + strand, within Psyr_4251at 5068.742 kb on + strand, within Psyr_4251at 5068.742 kb on + strand, within Psyr_4251at 5068.743 kb on - strand, within Psyr_4251at 5068.801 kb on + strand, within Psyr_4251at 5068.871 kb on + strand, within Psyr_4251at 5068.907 kb on + strand, within Psyr_4251at 5068.907 kb on + strand, within Psyr_4251at 5068.907 kb on + strand, within Psyr_4251at 5068.908 kb on - strand, within Psyr_4251at 5068.908 kb on - strand, within Psyr_4251at 5068.908 kb on - strand, within Psyr_4251at 5068.979 kb on + strand, within Psyr_4251at 5068.980 kb on - strand, within Psyr_4251at 5068.980 kb on - strand, within Psyr_4251at 5068.980 kb on - strand, within Psyr_4251at 5068.980 kb on - strand, within Psyr_4251at 5068.980 kb on - strand, within Psyr_4251at 5069.010 kb on + strand, within Psyr_4251at 5069.018 kb on + strand, within Psyr_4251at 5069.042 kb on + strand, within Psyr_4251at 5069.042 kb on + strand, within Psyr_4251at 5069.042 kb on + strand, within Psyr_4251at 5069.043 kb on - strand, within Psyr_4251at 5069.043 kb on - strand, within Psyr_4251at 5069.043 kb on - strand, within Psyr_4251at 5069.126 kb on + strand, within Psyr_4251at 5069.126 kb on + strand, within Psyr_4251at 5069.127 kb on - strand, within Psyr_4251at 5069.127 kb on - strand, within Psyr_4251at 5069.127 kb on - strand, within Psyr_4251at 5069.144 kb on + strand, within Psyr_4251at 5069.144 kb on + strand, within Psyr_4251at 5069.145 kb on - strand, within Psyr_4251at 5069.203 kb on + strandat 5069.203 kb on + strandat 5069.203 kb on + strandat 5069.203 kb on + strandat 5069.203 kb on + strandat 5069.204 kb on - strandat 5069.204 kb on - strandat 5069.204 kb on - strandat 5069.204 kb on - strandat 5069.204 kb on - strandat 5069.204 kb on - strandat 5069.269 kb on + strandat 5069.269 kb on + strandat 5069.632 kb on + strand, within Psyr_4252at 5069.632 kb on + strand, within Psyr_4252at 5069.632 kb on + strand, within Psyr_4252at 5069.632 kb on + strand, within Psyr_4252at 5069.633 kb on - strand, within Psyr_4252at 5069.633 kb on - strand, within Psyr_4252at 5069.640 kb on - strand, within Psyr_4252at 5069.763 kb on + strand, within Psyr_4252at 5069.763 kb on + strand, within Psyr_4252at 5069.763 kb on + strand, within Psyr_4252at 5069.764 kb on - strand, within Psyr_4252at 5069.887 kb on + strand, within Psyr_4252at 5069.888 kb on - strand, within Psyr_4252at 5069.888 kb on - strand, within Psyr_4252at 5069.888 kb on - strand, within Psyr_4252at 5069.888 kb on - strand, within Psyr_4252at 5069.909 kb on - strand, within Psyr_4252at 5069.919 kb on - strand, within Psyr_4252at 5069.919 kb on - strand, within Psyr_4252at 5069.919 kb on - strand, within Psyr_4252at 5069.921 kb on + strand, within Psyr_4252at 5069.921 kb on + strand, within Psyr_4252at 5069.922 kb on - strand, within Psyr_4252at 5069.922 kb on - strand, within Psyr_4252at 5069.922 kb on - strand, within Psyr_4252at 5069.922 kb on - strand, within Psyr_4252at 5069.922 kb on - strand, within Psyr_4252at 5069.922 kb on - strand, within Psyr_4252at 5070.021 kb on + strandat 5070.021 kb on + strandat 5070.021 kb on + strandat 5070.022 kb on - strandat 5070.022 kb on - strandat 5070.257 kb on + strandat 5070.257 kb on + strandat 5070.310 kb on + strandat 5070.311 kb on - strandat 5070.311 kb on - strandat 5070.312 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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5,068,373 + +0.1
5,068,388 + +0.3
5,068,388 + +0.5
5,068,388 + +1.2
5,068,388 + +0.9
5,068,389 - -1.1
5,068,389 - +0.1
5,068,544 + Psyr_4251 0.18 +1.0
5,068,544 + Psyr_4251 0.18 -0.8
5,068,544 + Psyr_4251 0.18 +1.1
5,068,544 + Psyr_4251 0.18 -0.1
5,068,545 - Psyr_4251 0.18 +0.5
5,068,574 + Psyr_4251 0.21 -0.7
5,068,574 + Psyr_4251 0.21 -0.1
5,068,586 + Psyr_4251 0.22 +0.3
5,068,586 + Psyr_4251 0.22 +0.3
5,068,586 + Psyr_4251 0.22 +0.1
5,068,586 + Psyr_4251 0.22 +0.5
5,068,586 + Psyr_4251 0.22 +0.6
5,068,587 - Psyr_4251 0.22 +0.4
5,068,587 - Psyr_4251 0.22 -0.5
5,068,587 - Psyr_4251 0.22 +1.0
5,068,587 - Psyr_4251 0.22 +0.6
5,068,587 - Psyr_4251 0.22 -1.2
5,068,587 - Psyr_4251 0.22 +0.0
5,068,587 - Psyr_4251 0.22 -0.5
5,068,587 - Psyr_4251 0.22 +0.2
5,068,587 - Psyr_4251 0.22 -1.0
5,068,646 + Psyr_4251 0.29 -0.7
5,068,646 + Psyr_4251 0.29 -0.0
5,068,647 - Psyr_4251 0.29 +0.1
5,068,647 - Psyr_4251 0.29 -2.7
5,068,647 - Psyr_4251 0.29 -1.4
5,068,647 - Psyr_4251 0.29 -0.1
5,068,647 - Psyr_4251 0.29 -1.7
5,068,688 + Psyr_4251 0.34 -0.8
5,068,688 + Psyr_4251 0.34 -0.6
5,068,688 + Psyr_4251 0.34 -1.6
5,068,689 - Psyr_4251 0.34 -1.8
5,068,689 - Psyr_4251 0.34 -0.4
5,068,742 + Psyr_4251 0.40 -0.1
5,068,742 + Psyr_4251 0.40 +0.5
5,068,742 + Psyr_4251 0.40 +0.4
5,068,743 - Psyr_4251 0.40 -0.0
5,068,801 + Psyr_4251 0.46 -0.2
5,068,871 + Psyr_4251 0.54 -0.5
5,068,907 + Psyr_4251 0.58 -1.7
5,068,907 + Psyr_4251 0.58 +0.3
5,068,907 + Psyr_4251 0.58 -1.4
5,068,908 - Psyr_4251 0.58 -0.8
5,068,908 - Psyr_4251 0.58 +1.2
5,068,908 - Psyr_4251 0.58 +0.2
5,068,979 + Psyr_4251 0.66 +0.4
5,068,980 - Psyr_4251 0.66 -1.2
5,068,980 - Psyr_4251 0.66 -0.4
5,068,980 - Psyr_4251 0.66 +0.3
5,068,980 - Psyr_4251 0.66 -0.1
5,068,980 - Psyr_4251 0.66 +0.9
5,069,010 + Psyr_4251 0.70 +1.6
5,069,018 + Psyr_4251 0.71 -1.5
5,069,042 + Psyr_4251 0.73 +0.2
5,069,042 + Psyr_4251 0.73 -0.8
5,069,042 + Psyr_4251 0.73 +0.4
5,069,043 - Psyr_4251 0.73 +0.2
5,069,043 - Psyr_4251 0.73 +0.8
5,069,043 - Psyr_4251 0.73 +1.3
5,069,126 + Psyr_4251 0.83 -0.8
5,069,126 + Psyr_4251 0.83 -2.1
5,069,127 - Psyr_4251 0.83 +0.3
5,069,127 - Psyr_4251 0.83 -2.2
5,069,127 - Psyr_4251 0.83 +1.0
5,069,144 + Psyr_4251 0.85 -0.4
5,069,144 + Psyr_4251 0.85 -0.3
5,069,145 - Psyr_4251 0.85 +0.2
5,069,203 + +0.2
5,069,203 + -0.5
5,069,203 + -0.6
5,069,203 + -0.7
5,069,203 + -0.6
5,069,204 - -1.0
5,069,204 - +0.8
5,069,204 - -0.1
5,069,204 - +0.0
5,069,204 - -0.2
5,069,204 - +0.2
5,069,269 + +1.1
5,069,269 + +0.2
5,069,632 + Psyr_4252 0.47 +0.6
5,069,632 + Psyr_4252 0.47 +1.1
5,069,632 + Psyr_4252 0.47 -0.6
5,069,632 + Psyr_4252 0.47 +1.3
5,069,633 - Psyr_4252 0.47 +0.3
5,069,633 - Psyr_4252 0.47 -1.1
5,069,640 - Psyr_4252 0.48 +2.8
5,069,763 + Psyr_4252 0.66 -0.9
5,069,763 + Psyr_4252 0.66 -0.7
5,069,763 + Psyr_4252 0.66 +1.7
5,069,764 - Psyr_4252 0.66 +0.8
5,069,887 + Psyr_4252 0.83 +0.0
5,069,888 - Psyr_4252 0.83 -1.1
5,069,888 - Psyr_4252 0.83 +0.9
5,069,888 - Psyr_4252 0.83 +0.4
5,069,888 - Psyr_4252 0.83 -0.5
5,069,909 - Psyr_4252 0.86 +0.4
5,069,919 - Psyr_4252 0.87 +1.0
5,069,919 - Psyr_4252 0.87 +1.1
5,069,919 - Psyr_4252 0.87 -1.4
5,069,921 + Psyr_4252 0.88 -0.1
5,069,921 + Psyr_4252 0.88 -0.6
5,069,922 - Psyr_4252 0.88 +0.1
5,069,922 - Psyr_4252 0.88 +1.3
5,069,922 - Psyr_4252 0.88 -1.8
5,069,922 - Psyr_4252 0.88 +1.3
5,069,922 - Psyr_4252 0.88 +0.0
5,069,922 - Psyr_4252 0.88 +0.8
5,070,021 + +1.8
5,070,021 + -0.9
5,070,021 + +0.4
5,070,022 - -0.2
5,070,022 - +1.3
5,070,257 + -0.3
5,070,257 + +1.5
5,070,310 + -1.2
5,070,311 - +0.1
5,070,311 - -1.6
5,070,312 + -1.0

Or see this region's nucleotide sequence