Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3503

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3502 and Psyr_3503 are separated by 161 nucleotidesPsyr_3503 and Psyr_3504 are separated by 47 nucleotides Psyr_3502: Psyr_3502 - membrane protein, putative, at 4,173,615 to 4,177,013 _3502 Psyr_3503: Psyr_3503 - conserved hypothetical protein, at 4,177,175 to 4,177,702 _3503 Psyr_3504: Psyr_3504 - GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,177,750 to 4,179,987 _3504 Position (kb) 4177 4178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4176.254 kb on + strand, within Psyr_3502at 4176.272 kb on - strand, within Psyr_3502at 4176.297 kb on - strand, within Psyr_3502at 4176.376 kb on - strand, within Psyr_3502at 4176.474 kb on + strand, within Psyr_3502at 4176.490 kb on + strand, within Psyr_3502at 4176.490 kb on + strand, within Psyr_3502at 4176.491 kb on - strand, within Psyr_3502at 4176.491 kb on - strand, within Psyr_3502at 4176.491 kb on - strand, within Psyr_3502at 4176.491 kb on - strand, within Psyr_3502at 4176.507 kb on + strand, within Psyr_3502at 4176.508 kb on - strand, within Psyr_3502at 4176.508 kb on - strand, within Psyr_3502at 4176.538 kb on + strand, within Psyr_3502at 4176.563 kb on - strand, within Psyr_3502at 4176.619 kb on + strand, within Psyr_3502at 4176.619 kb on + strand, within Psyr_3502at 4176.619 kb on + strand, within Psyr_3502at 4176.626 kb on - strand, within Psyr_3502at 4176.703 kb on + strandat 4176.704 kb on - strandat 4176.744 kb on + strandat 4176.744 kb on + strandat 4176.744 kb on + strandat 4176.816 kb on + strandat 4176.816 kb on + strandat 4176.816 kb on + strandat 4176.816 kb on + strandat 4176.816 kb on + strandat 4176.816 kb on + strandat 4176.816 kb on + strandat 4176.816 kb on + strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.817 kb on - strandat 4176.819 kb on - strandat 4176.883 kb on + strandat 4177.010 kb on - strandat 4177.120 kb on - strandat 4177.134 kb on - strandat 4177.134 kb on - strandat 4177.137 kb on + strandat 4177.155 kb on - strandat 4177.212 kb on + strandat 4177.212 kb on + strandat 4177.216 kb on - strandat 4177.274 kb on + strand, within Psyr_3503at 4177.274 kb on + strand, within Psyr_3503at 4177.274 kb on + strand, within Psyr_3503at 4177.275 kb on - strand, within Psyr_3503at 4177.275 kb on - strand, within Psyr_3503at 4177.275 kb on - strand, within Psyr_3503at 4177.275 kb on - strand, within Psyr_3503at 4177.280 kb on + strand, within Psyr_3503at 4177.280 kb on + strand, within Psyr_3503at 4177.280 kb on + strand, within Psyr_3503at 4177.313 kb on + strand, within Psyr_3503at 4177.314 kb on - strand, within Psyr_3503at 4177.380 kb on + strand, within Psyr_3503at 4177.380 kb on + strand, within Psyr_3503at 4177.558 kb on + strand, within Psyr_3503at 4177.625 kb on + strand, within Psyr_3503at 4177.625 kb on + strand, within Psyr_3503at 4177.626 kb on - strand, within Psyr_3503at 4177.626 kb on - strand, within Psyr_3503at 4177.667 kb on + strandat 4177.667 kb on + strandat 4177.667 kb on + strandat 4177.667 kb on + strandat 4177.667 kb on + strandat 4177.667 kb on + strandat 4177.667 kb on + strandat 4177.668 kb on - strandat 4177.668 kb on - strandat 4177.668 kb on - strandat 4177.668 kb on - strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.853 kb on + strandat 4177.854 kb on - strandat 4177.854 kb on - strandat 4177.854 kb on - strandat 4177.854 kb on - strandat 4177.854 kb on - strandat 4177.854 kb on - strandat 4178.157 kb on + strand, within Psyr_3504at 4178.157 kb on + strand, within Psyr_3504at 4178.157 kb on + strand, within Psyr_3504at 4178.157 kb on + strand, within Psyr_3504at 4178.158 kb on - strand, within Psyr_3504at 4178.158 kb on - strand, within Psyr_3504at 4178.158 kb on - strand, within Psyr_3504at 4178.158 kb on - strand, within Psyr_3504at 4178.159 kb on + strand, within Psyr_3504at 4178.159 kb on + strand, within Psyr_3504at 4178.160 kb on - strand, within Psyr_3504at 4178.160 kb on - strand, within Psyr_3504at 4178.160 kb on - strand, within Psyr_3504at 4178.173 kb on + strand, within Psyr_3504at 4178.174 kb on - strand, within Psyr_3504at 4178.255 kb on - strand, within Psyr_3504at 4178.307 kb on + strand, within Psyr_3504at 4178.307 kb on + strand, within Psyr_3504at 4178.308 kb on - strand, within Psyr_3504at 4178.308 kb on - strand, within Psyr_3504at 4178.319 kb on + strandat 4178.319 kb on + strand, within Psyr_3504at 4178.319 kb on + strand, within Psyr_3504at 4178.320 kb on - strand, within Psyr_3504at 4178.320 kb on - strand, within Psyr_3504at 4178.522 kb on + strandat 4178.578 kb on - strand, within Psyr_3504at 4178.578 kb on - strand, within Psyr_3504

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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4,176,254 + Psyr_3502 0.78 +0.5
4,176,272 - Psyr_3502 0.78 -0.9
4,176,297 - Psyr_3502 0.79 +0.2
4,176,376 - Psyr_3502 0.81 -0.4
4,176,474 + Psyr_3502 0.84 -0.0
4,176,490 + Psyr_3502 0.85 +0.5
4,176,490 + Psyr_3502 0.85 -1.7
4,176,491 - Psyr_3502 0.85 +0.5
4,176,491 - Psyr_3502 0.85 +1.4
4,176,491 - Psyr_3502 0.85 -0.6
4,176,491 - Psyr_3502 0.85 -0.3
4,176,507 + Psyr_3502 0.85 -0.8
4,176,508 - Psyr_3502 0.85 +0.2
4,176,508 - Psyr_3502 0.85 +1.0
4,176,538 + Psyr_3502 0.86 +0.5
4,176,563 - Psyr_3502 0.87 -0.3
4,176,619 + Psyr_3502 0.88 +2.5
4,176,619 + Psyr_3502 0.88 -0.0
4,176,619 + Psyr_3502 0.88 +0.1
4,176,626 - Psyr_3502 0.89 +0.9
4,176,703 + +0.8
4,176,704 - -1.7
4,176,744 + +0.0
4,176,744 + +1.8
4,176,744 + -0.5
4,176,816 + -1.1
4,176,816 + +3.5
4,176,816 + +0.7
4,176,816 + -0.9
4,176,816 + +1.7
4,176,816 + -0.1
4,176,816 + -1.0
4,176,816 + -0.8
4,176,817 - -1.5
4,176,817 - -0.5
4,176,817 - +0.4
4,176,817 - -0.1
4,176,817 - +0.2
4,176,817 - -0.6
4,176,817 - -0.5
4,176,817 - -0.6
4,176,817 - +0.4
4,176,817 - -2.9
4,176,817 - -0.5
4,176,819 - -0.9
4,176,883 + -1.7
4,177,010 - -1.8
4,177,120 - -1.1
4,177,134 - -1.8
4,177,134 - -2.3
4,177,137 + -0.7
4,177,155 - +1.7
4,177,212 + +2.7
4,177,212 + -0.3
4,177,216 - -0.1
4,177,274 + Psyr_3503 0.19 -0.3
4,177,274 + Psyr_3503 0.19 -1.9
4,177,274 + Psyr_3503 0.19 -0.7
4,177,275 - Psyr_3503 0.19 -0.9
4,177,275 - Psyr_3503 0.19 -3.9
4,177,275 - Psyr_3503 0.19 -1.3
4,177,275 - Psyr_3503 0.19 +0.7
4,177,280 + Psyr_3503 0.20 -0.3
4,177,280 + Psyr_3503 0.20 -0.2
4,177,280 + Psyr_3503 0.20 -0.1
4,177,313 + Psyr_3503 0.26 +0.2
4,177,314 - Psyr_3503 0.26 +0.7
4,177,380 + Psyr_3503 0.39 -0.7
4,177,380 + Psyr_3503 0.39 -0.9
4,177,558 + Psyr_3503 0.73 -2.8
4,177,625 + Psyr_3503 0.85 -0.4
4,177,625 + Psyr_3503 0.85 +0.1
4,177,626 - Psyr_3503 0.85 -0.1
4,177,626 - Psyr_3503 0.85 -0.9
4,177,667 + +1.1
4,177,667 + +0.2
4,177,667 + +0.4
4,177,667 + -0.8
4,177,667 + +0.5
4,177,667 + +1.0
4,177,667 + +0.1
4,177,668 - +1.2
4,177,668 - +0.2
4,177,668 - +1.4
4,177,668 - -0.1
4,177,853 + +3.1
4,177,853 + -0.0
4,177,853 + -0.3
4,177,853 + -0.1
4,177,853 + +0.5
4,177,853 + -1.6
4,177,853 + +0.8
4,177,853 + +0.1
4,177,853 + +0.7
4,177,854 - +1.8
4,177,854 - -0.2
4,177,854 - -2.9
4,177,854 - -2.3
4,177,854 - +0.6
4,177,854 - +0.2
4,178,157 + Psyr_3504 0.18 -1.2
4,178,157 + Psyr_3504 0.18 -1.3
4,178,157 + Psyr_3504 0.18 -0.4
4,178,157 + Psyr_3504 0.18 -0.5
4,178,158 - Psyr_3504 0.18 -0.6
4,178,158 - Psyr_3504 0.18 +0.7
4,178,158 - Psyr_3504 0.18 -1.8
4,178,158 - Psyr_3504 0.18 +1.1
4,178,159 + Psyr_3504 0.18 -3.4
4,178,159 + Psyr_3504 0.18 -0.5
4,178,160 - Psyr_3504 0.18 -0.8
4,178,160 - Psyr_3504 0.18 +0.9
4,178,160 - Psyr_3504 0.18 -1.3
4,178,173 + Psyr_3504 0.19 +0.9
4,178,174 - Psyr_3504 0.19 +1.7
4,178,255 - Psyr_3504 0.23 +0.0
4,178,307 + Psyr_3504 0.25 -0.1
4,178,307 + Psyr_3504 0.25 -0.6
4,178,308 - Psyr_3504 0.25 -0.1
4,178,308 - Psyr_3504 0.25 +2.2
4,178,319 + -0.3
4,178,319 + Psyr_3504 0.25 -0.8
4,178,319 + Psyr_3504 0.25 +0.6
4,178,320 - Psyr_3504 0.25 -2.1
4,178,320 - Psyr_3504 0.25 +0.7
4,178,522 + +3.2
4,178,578 - Psyr_3504 0.37 +0.8
4,178,578 - Psyr_3504 0.37 +0.7

Or see this region's nucleotide sequence