Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3427 and Psyr_3428 are separated by 0 nucleotides Psyr_3428 and Psyr_3429 are separated by 57 nucleotides Psyr_3429 and Psyr_3430 are separated by 75 nucleotides Psyr_3430 and Psyr_3431 are separated by 45 nucleotides
Psyr_3427: Psyr_3427 - conserved hypothetical protein, at 4,091,234 to 4,091,635
_3427
Psyr_3428: Psyr_3428 - CheW-like protein, at 4,091,636 to 4,092,115
_3428
Psyr_3429: Psyr_3429 - CheW-like protein, at 4,092,173 to 4,093,075
_3429
Psyr_3430: Psyr_3430 - Cobyrinic acid a,c-diamide synthase, at 4,093,151 to 4,093,939
_3430
Psyr_3431: Psyr_3431 - OmpA/MotB, at 4,093,985 to 4,094,872
_3431
Position (kb) 4092
4093
4094 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4091.235 kb on + strand at 4091.235 kb on + strand at 4091.235 kb on + strand at 4091.235 kb on + strand at 4091.236 kb on - strand at 4091.236 kb on - strand at 4091.236 kb on - strand at 4091.245 kb on + strand at 4091.245 kb on + strand at 4091.246 kb on - strand at 4091.470 kb on - strand, within Psyr_3427 at 4091.578 kb on + strand, within Psyr_3427 at 4091.578 kb on + strand, within Psyr_3427 at 4091.578 kb on + strand, within Psyr_3427 at 4091.579 kb on - strand, within Psyr_3427 at 4091.579 kb on - strand, within Psyr_3427 at 4091.621 kb on + strand at 4091.621 kb on + strand at 4091.621 kb on + strand at 4091.622 kb on - strand at 4091.622 kb on - strand at 4091.622 kb on - strand at 4091.796 kb on + strand, within Psyr_3428 at 4091.796 kb on + strand, within Psyr_3428 at 4091.797 kb on - strand, within Psyr_3428 at 4091.960 kb on + strand, within Psyr_3428 at 4091.960 kb on + strand, within Psyr_3428 at 4091.960 kb on + strand, within Psyr_3428 at 4091.960 kb on + strand, within Psyr_3428 at 4091.961 kb on - strand, within Psyr_3428 at 4091.964 kb on + strand, within Psyr_3428 at 4091.964 kb on + strand, within Psyr_3428 at 4091.964 kb on + strand, within Psyr_3428 at 4091.964 kb on + strand, within Psyr_3428 at 4091.964 kb on + strand, within Psyr_3428 at 4092.001 kb on - strand, within Psyr_3428 at 4092.026 kb on + strand, within Psyr_3428 at 4092.026 kb on + strand, within Psyr_3428 at 4092.026 kb on + strand, within Psyr_3428 at 4092.026 kb on + strand, within Psyr_3428 at 4092.026 kb on + strand, within Psyr_3428 at 4092.026 kb on + strand at 4092.026 kb on + strand, within Psyr_3428 at 4092.026 kb on + strand, within Psyr_3428 at 4092.027 kb on - strand, within Psyr_3428 at 4092.027 kb on - strand, within Psyr_3428 at 4092.027 kb on - strand, within Psyr_3428 at 4092.027 kb on - strand, within Psyr_3428 at 4092.079 kb on + strand at 4092.079 kb on + strand at 4092.079 kb on + strand at 4092.080 kb on - strand at 4092.080 kb on - strand at 4092.080 kb on - strand at 4092.109 kb on + strand at 4092.109 kb on + strand at 4092.110 kb on - strand at 4092.110 kb on - strand at 4092.110 kb on - strand at 4092.110 kb on - strand at 4092.110 kb on - strand at 4092.110 kb on - strand at 4092.174 kb on + strand at 4092.175 kb on - strand at 4092.175 kb on - strand at 4092.393 kb on + strand, within Psyr_3429 at 4092.394 kb on - strand, within Psyr_3429 at 4092.825 kb on - strand, within Psyr_3429 at 4092.978 kb on + strand, within Psyr_3429 at 4092.979 kb on - strand, within Psyr_3429 at 4093.028 kb on + strand at 4093.028 kb on + strand at 4093.028 kb on + strand at 4093.028 kb on + strand at 4093.028 kb on + strand at 4093.029 kb on - strand at 4093.029 kb on - strand at 4093.034 kb on + strand at 4093.035 kb on - strand at 4093.130 kb on + strand at 4093.130 kb on + strand at 4093.130 kb on + strand at 4093.131 kb on - strand at 4093.131 kb on - strand at 4093.186 kb on + strand at 4093.186 kb on + strand at 4093.186 kb on + strand at 4093.186 kb on + strand at 4093.187 kb on - strand at 4093.187 kb on - strand at 4093.187 kb on - strand at 4093.187 kb on - strand at 4093.187 kb on - strand at 4093.187 kb on - strand at 4093.187 kb on - strand at 4093.249 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.296 kb on + strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.297 kb on - strand, within Psyr_3430 at 4093.395 kb on + strand, within Psyr_3430 at 4093.395 kb on + strand, within Psyr_3430 at 4093.395 kb on + strand, within Psyr_3430 at 4093.396 kb on - strand, within Psyr_3430 at 4093.396 kb on - strand, within Psyr_3430 at 4093.439 kb on - strand, within Psyr_3430 at 4093.684 kb on + strand, within Psyr_3430 at 4093.684 kb on + strand, within Psyr_3430 at 4093.684 kb on + strand, within Psyr_3430 at 4093.685 kb on - strand, within Psyr_3430 at 4093.685 kb on - strand, within Psyr_3430 at 4093.744 kb on + strand, within Psyr_3430 at 4093.801 kb on - strand, within Psyr_3430 at 4093.801 kb on - strand, within Psyr_3430 at 4093.940 kb on + strand at 4093.940 kb on + strand at 4093.940 kb on + strand at 4093.940 kb on + strand at 4093.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 4,091,235 + -2.2 4,091,235 + -0.5 4,091,235 + -1.1 4,091,235 + -0.7 4,091,236 - -0.0 4,091,236 - -2.0 4,091,236 - +0.1 4,091,245 + -1.8 4,091,245 + +1.6 4,091,246 - +0.9 4,091,470 - Psyr_3427 0.59 +0.4 4,091,578 + Psyr_3427 0.86 -3.4 4,091,578 + Psyr_3427 0.86 -1.8 4,091,578 + Psyr_3427 0.86 -2.4 4,091,579 - Psyr_3427 0.86 -0.7 4,091,579 - Psyr_3427 0.86 -0.4 4,091,621 + -2.7 4,091,621 + -1.0 4,091,621 + -1.0 4,091,622 - +0.6 4,091,622 - +1.1 4,091,622 - +0.5 4,091,796 + Psyr_3428 0.33 +0.7 4,091,796 + Psyr_3428 0.33 -0.7 4,091,797 - Psyr_3428 0.34 -0.5 4,091,960 + Psyr_3428 0.68 -0.2 4,091,960 + Psyr_3428 0.68 -2.1 4,091,960 + Psyr_3428 0.68 -0.3 4,091,960 + Psyr_3428 0.68 +1.5 4,091,961 - Psyr_3428 0.68 -0.7 4,091,964 + Psyr_3428 0.68 +0.6 4,091,964 + Psyr_3428 0.68 -0.1 4,091,964 + Psyr_3428 0.68 -2.1 4,091,964 + Psyr_3428 0.68 +0.6 4,091,964 + Psyr_3428 0.68 -0.5 4,092,001 - Psyr_3428 0.76 +1.0 4,092,026 + Psyr_3428 0.81 -0.1 4,092,026 + Psyr_3428 0.81 -1.8 4,092,026 + Psyr_3428 0.81 -2.0 4,092,026 + Psyr_3428 0.81 -2.2 4,092,026 + Psyr_3428 0.81 +1.2 4,092,026 + +1.6 4,092,026 + Psyr_3428 0.81 -0.2 4,092,026 + Psyr_3428 0.81 -0.1 4,092,027 - Psyr_3428 0.81 +0.5 4,092,027 - Psyr_3428 0.81 +0.5 4,092,027 - Psyr_3428 0.81 -2.2 4,092,027 - Psyr_3428 0.81 +0.7 4,092,079 + -1.3 4,092,079 + +2.0 4,092,079 + -3.0 4,092,080 - +1.5 4,092,080 - +0.2 4,092,080 - +1.6 4,092,109 + -1.2 4,092,109 + +0.4 4,092,110 - -0.0 4,092,110 - -0.2 4,092,110 - +0.6 4,092,110 - -0.4 4,092,110 - +0.0 4,092,110 - +0.0 4,092,174 + +1.1 4,092,175 - -2.3 4,092,175 - +0.9 4,092,393 + Psyr_3429 0.24 -0.9 4,092,394 - Psyr_3429 0.24 +1.2 4,092,825 - Psyr_3429 0.72 -0.6 4,092,978 + Psyr_3429 0.89 -0.3 4,092,979 - Psyr_3429 0.89 -0.2 4,093,028 + +0.4 4,093,028 + -0.1 4,093,028 + +0.0 4,093,028 + -0.2 4,093,028 + +1.7 4,093,029 - -0.8 4,093,029 - +0.1 4,093,034 + -0.4 4,093,035 - -1.4 4,093,130 + -0.4 4,093,130 + -0.5 4,093,130 + -0.2 4,093,131 - -0.9 4,093,131 - -0.3 4,093,186 + +0.1 4,093,186 + +0.6 4,093,186 + -1.4 4,093,186 + +0.7 4,093,187 - +0.5 4,093,187 - -0.5 4,093,187 - -0.6 4,093,187 - +0.3 4,093,187 - +0.1 4,093,187 - +1.6 4,093,187 - +0.7 4,093,249 + Psyr_3430 0.12 +0.0 4,093,296 + Psyr_3430 0.18 -0.4 4,093,296 + Psyr_3430 0.18 -0.4 4,093,296 + Psyr_3430 0.18 -1.4 4,093,296 + Psyr_3430 0.18 +0.1 4,093,296 + Psyr_3430 0.18 -3.0 4,093,296 + Psyr_3430 0.18 +0.4 4,093,296 + Psyr_3430 0.18 -0.1 4,093,296 + Psyr_3430 0.18 -0.4 4,093,296 + Psyr_3430 0.18 +2.1 4,093,297 - Psyr_3430 0.19 -0.3 4,093,297 - Psyr_3430 0.19 +0.3 4,093,297 - Psyr_3430 0.19 +0.4 4,093,297 - Psyr_3430 0.19 +0.6 4,093,297 - Psyr_3430 0.19 +1.3 4,093,297 - Psyr_3430 0.19 -1.0 4,093,297 - Psyr_3430 0.19 -1.2 4,093,297 - Psyr_3430 0.19 +0.3 4,093,395 + Psyr_3430 0.31 +0.1 4,093,395 + Psyr_3430 0.31 +0.1 4,093,395 + Psyr_3430 0.31 -0.3 4,093,396 - Psyr_3430 0.31 -0.3 4,093,396 - Psyr_3430 0.31 -0.4 4,093,439 - Psyr_3430 0.37 -0.2 4,093,684 + Psyr_3430 0.68 -0.2 4,093,684 + Psyr_3430 0.68 +0.0 4,093,684 + Psyr_3430 0.68 +0.5 4,093,685 - Psyr_3430 0.68 +0.4 4,093,685 - Psyr_3430 0.68 -1.7 4,093,744 + Psyr_3430 0.75 +2.4 4,093,801 - Psyr_3430 0.82 -0.3 4,093,801 - Psyr_3430 0.82 +0.0 4,093,940 + +0.8 4,093,940 + -0.4 4,093,940 + -1.0 4,093,940 + +0.0 4,093,941 - +0.0
Or see this region's nucleotide sequence