Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3305

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3304 and Psyr_3305 overlap by 1 nucleotidesPsyr_3305 and Psyr_3306 are separated by 1 nucleotides Psyr_3304: Psyr_3304 - Lipopolysaccharide biosynthesis, at 3,953,610 to 3,955,601 _3304 Psyr_3305: Psyr_3305 - Glycosyl transferase, group 1, at 3,955,601 to 3,956,779 _3305 Psyr_3306: Psyr_3306 - Glycoside hydrolase, family 5, at 3,956,781 to 3,958,094 _3306 Position (kb) 3955 3956 3957Strain fitness (log2 ratio) -2 -1 0 1 2at 3954.684 kb on + strand, within Psyr_3304at 3954.685 kb on - strand, within Psyr_3304at 3954.685 kb on - strand, within Psyr_3304at 3954.726 kb on + strand, within Psyr_3304at 3954.726 kb on + strand, within Psyr_3304at 3954.726 kb on + strand, within Psyr_3304at 3954.727 kb on - strand, within Psyr_3304at 3954.861 kb on + strand, within Psyr_3304at 3954.861 kb on + strand, within Psyr_3304at 3954.929 kb on + strand, within Psyr_3304at 3954.930 kb on - strand, within Psyr_3304at 3954.930 kb on - strand, within Psyr_3304at 3954.933 kb on - strand, within Psyr_3304at 3955.044 kb on + strand, within Psyr_3304at 3955.044 kb on + strand, within Psyr_3304at 3955.044 kb on + strand, within Psyr_3304at 3955.045 kb on - strand, within Psyr_3304at 3955.045 kb on - strandat 3955.045 kb on - strand, within Psyr_3304at 3955.054 kb on - strand, within Psyr_3304at 3955.214 kb on - strand, within Psyr_3304at 3955.255 kb on - strand, within Psyr_3304at 3955.609 kb on - strandat 3955.705 kb on + strandat 3955.706 kb on - strandat 3955.706 kb on - strandat 3955.706 kb on - strandat 3956.180 kb on + strand, within Psyr_3305at 3956.180 kb on + strand, within Psyr_3305at 3956.181 kb on - strand, within Psyr_3305at 3956.181 kb on - strand, within Psyr_3305at 3956.547 kb on + strand, within Psyr_3305at 3956.547 kb on + strand, within Psyr_3305at 3956.547 kb on + strand, within Psyr_3305at 3956.607 kb on - strand, within Psyr_3305at 3956.729 kb on - strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.751 kb on + strandat 3956.752 kb on - strandat 3956.752 kb on - strandat 3956.752 kb on - strandat 3956.928 kb on + strand, within Psyr_3306at 3956.946 kb on + strand, within Psyr_3306at 3956.946 kb on + strand, within Psyr_3306at 3956.946 kb on + strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3956.947 kb on - strand, within Psyr_3306at 3957.039 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.090 kb on + strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.091 kb on - strand, within Psyr_3306at 3957.105 kb on + strand, within Psyr_3306at 3957.301 kb on - strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.381 kb on + strand, within Psyr_3306at 3957.382 kb on - strand, within Psyr_3306at 3957.382 kb on - strand, within Psyr_3306at 3957.382 kb on - strand, within Psyr_3306at 3957.384 kb on + strand, within Psyr_3306at 3957.384 kb on + strand, within Psyr_3306at 3957.384 kb on + strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.385 kb on - strand, within Psyr_3306at 3957.412 kb on - strand, within Psyr_3306at 3957.606 kb on + strand, within Psyr_3306at 3957.606 kb on + strand, within Psyr_3306at 3957.607 kb on - strand, within Psyr_3306at 3957.660 kb on + strand, within Psyr_3306at 3957.660 kb on + strand, within Psyr_3306at 3957.660 kb on + strand, within Psyr_3306at 3957.661 kb on - strand, within Psyr_3306

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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3,954,684 + Psyr_3304 0.54 +1.6
3,954,685 - Psyr_3304 0.54 +2.6
3,954,685 - Psyr_3304 0.54 +0.6
3,954,726 + Psyr_3304 0.56 +0.3
3,954,726 + Psyr_3304 0.56 -2.1
3,954,726 + Psyr_3304 0.56 +1.1
3,954,727 - Psyr_3304 0.56 -0.3
3,954,861 + Psyr_3304 0.63 -2.3
3,954,861 + Psyr_3304 0.63 +1.4
3,954,929 + Psyr_3304 0.66 -0.1
3,954,930 - Psyr_3304 0.66 -1.0
3,954,930 - Psyr_3304 0.66 +1.2
3,954,933 - Psyr_3304 0.66 +1.1
3,955,044 + Psyr_3304 0.72 -2.0
3,955,044 + Psyr_3304 0.72 -0.8
3,955,044 + Psyr_3304 0.72 -0.3
3,955,045 - Psyr_3304 0.72 -0.5
3,955,045 - +1.2
3,955,045 - Psyr_3304 0.72 -0.7
3,955,054 - Psyr_3304 0.72 +0.1
3,955,214 - Psyr_3304 0.81 +0.5
3,955,255 - Psyr_3304 0.83 +0.0
3,955,609 - +0.0
3,955,705 + -0.7
3,955,706 - -1.1
3,955,706 - +1.5
3,955,706 - +0.0
3,956,180 + Psyr_3305 0.49 -0.7
3,956,180 + Psyr_3305 0.49 -0.5
3,956,181 - Psyr_3305 0.49 -0.2
3,956,181 - Psyr_3305 0.49 -0.6
3,956,547 + Psyr_3305 0.80 -0.6
3,956,547 + Psyr_3305 0.80 -1.0
3,956,547 + Psyr_3305 0.80 -0.4
3,956,607 - Psyr_3305 0.85 -0.3
3,956,729 - -0.3
3,956,751 + -2.4
3,956,751 + +0.8
3,956,751 + +0.1
3,956,751 + -0.2
3,956,751 + -1.0
3,956,751 + +0.6
3,956,751 + -1.2
3,956,752 - +0.2
3,956,752 - +0.6
3,956,752 - -0.8
3,956,928 + Psyr_3306 0.11 +0.1
3,956,946 + Psyr_3306 0.13 +0.0
3,956,946 + Psyr_3306 0.13 -0.4
3,956,946 + Psyr_3306 0.13 +0.6
3,956,947 - Psyr_3306 0.13 +1.4
3,956,947 - Psyr_3306 0.13 +1.3
3,956,947 - Psyr_3306 0.13 +0.6
3,956,947 - Psyr_3306 0.13 -0.7
3,957,039 + Psyr_3306 0.20 +0.6
3,957,090 + Psyr_3306 0.24 -0.7
3,957,090 + Psyr_3306 0.24 +1.3
3,957,090 + Psyr_3306 0.24 -0.5
3,957,090 + Psyr_3306 0.24 -0.2
3,957,090 + Psyr_3306 0.24 +0.6
3,957,091 - Psyr_3306 0.24 +0.8
3,957,091 - Psyr_3306 0.24 -0.2
3,957,091 - Psyr_3306 0.24 -0.7
3,957,091 - Psyr_3306 0.24 -0.4
3,957,091 - Psyr_3306 0.24 +1.8
3,957,105 + Psyr_3306 0.25 -1.0
3,957,301 - Psyr_3306 0.40 +0.6
3,957,381 + Psyr_3306 0.46 -0.5
3,957,381 + Psyr_3306 0.46 +0.6
3,957,381 + Psyr_3306 0.46 -0.9
3,957,381 + Psyr_3306 0.46 -0.9
3,957,382 - Psyr_3306 0.46 +1.0
3,957,382 - Psyr_3306 0.46 +1.6
3,957,382 - Psyr_3306 0.46 +1.4
3,957,384 + Psyr_3306 0.46 -0.2
3,957,384 + Psyr_3306 0.46 +0.3
3,957,384 + Psyr_3306 0.46 +0.4
3,957,385 - Psyr_3306 0.46 +0.6
3,957,385 - Psyr_3306 0.46 -1.0
3,957,385 - Psyr_3306 0.46 +0.6
3,957,385 - Psyr_3306 0.46 -1.4
3,957,412 - Psyr_3306 0.48 +0.2
3,957,606 + Psyr_3306 0.63 -1.7
3,957,606 + Psyr_3306 0.63 +0.6
3,957,607 - Psyr_3306 0.63 -0.3
3,957,660 + Psyr_3306 0.67 +0.4
3,957,660 + Psyr_3306 0.67 +0.6
3,957,660 + Psyr_3306 0.67 +0.3
3,957,661 - Psyr_3306 0.67 -0.7

Or see this region's nucleotide sequence