Experiment: KB with D-Salicin 240 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3294 and Psyr_3295 are separated by 204 nucleotides Psyr_3295 and Psyr_3296 are separated by 57 nucleotides Psyr_3296 and Psyr_3297 are separated by 102 nucleotides
Psyr_3294: Psyr_3294 - ABC transporter, at 3,940,713 to 3,942,623
_3294
Psyr_3295: Psyr_3295 - SLT, at 3,942,828 to 3,944,756
_3295
Psyr_3296: Psyr_3296 - MOSC:MOSC, N-terminal beta barrel, at 3,944,814 to 3,945,623
_3296
Psyr_3297: Psyr_3297 - CheW protein, at 3,945,726 to 3,946,652
_3297
Position (kb)
3942
3943
3944
3945 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3942.323 kb on - strand, within Psyr_3294 at 3942.653 kb on + strand at 3942.654 kb on - strand at 3942.662 kb on + strand at 3942.714 kb on + strand at 3942.727 kb on + strand at 3942.728 kb on - strand at 3942.728 kb on - strand at 3942.728 kb on - strand at 3942.735 kb on + strand at 3942.789 kb on + strand at 3942.790 kb on - strand at 3942.795 kb on + strand at 3942.796 kb on - strand at 3942.796 kb on - strand at 3942.853 kb on + strand at 3942.924 kb on + strand at 3942.925 kb on - strand at 3942.925 kb on - strand at 3942.928 kb on - strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.981 kb on + strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3942.982 kb on - strand at 3943.017 kb on + strand at 3943.018 kb on - strand at 3943.027 kb on - strand, within Psyr_3295 at 3943.179 kb on + strand, within Psyr_3295 at 3943.180 kb on - strand, within Psyr_3295 at 3943.180 kb on - strand, within Psyr_3295 at 3943.180 kb on - strand, within Psyr_3295 at 3943.180 kb on - strand, within Psyr_3295 at 3943.180 kb on - strand, within Psyr_3295 at 3943.183 kb on - strand, within Psyr_3295 at 3943.221 kb on + strand, within Psyr_3295 at 3943.230 kb on + strand, within Psyr_3295 at 3943.230 kb on + strand, within Psyr_3295 at 3943.407 kb on + strand, within Psyr_3295 at 3943.407 kb on + strand, within Psyr_3295 at 3943.407 kb on + strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.408 kb on - strand, within Psyr_3295 at 3943.725 kb on + strand, within Psyr_3295 at 3943.725 kb on + strand, within Psyr_3295 at 3943.726 kb on - strand, within Psyr_3295 at 3943.726 kb on - strand, within Psyr_3295 at 3943.807 kb on - strand, within Psyr_3295 at 3943.920 kb on + strand, within Psyr_3295 at 3943.920 kb on + strand, within Psyr_3295 at 3943.987 kb on - strand, within Psyr_3295 at 3944.172 kb on + strand, within Psyr_3295 at 3944.187 kb on + strand, within Psyr_3295 at 3944.187 kb on + strand, within Psyr_3295 at 3944.188 kb on - strand, within Psyr_3295 at 3944.188 kb on - strand, within Psyr_3295 at 3944.224 kb on - strand, within Psyr_3295 at 3944.427 kb on + strand, within Psyr_3295 at 3944.427 kb on + strand, within Psyr_3295 at 3944.428 kb on - strand, within Psyr_3295 at 3944.553 kb on + strand, within Psyr_3295 at 3944.655 kb on + strand at 3944.656 kb on - strand at 3944.656 kb on - strand at 3944.656 kb on - strand at 3944.656 kb on - strand at 3944.659 kb on + strand at 3944.660 kb on - strand at 3944.660 kb on - strand at 3944.668 kb on + strand at 3944.668 kb on + strand at 3944.668 kb on + strand at 3944.668 kb on + strand at 3944.668 kb on + strand at 3944.668 kb on + strand at 3944.668 kb on + strand at 3944.669 kb on - strand at 3944.669 kb on - strand at 3944.669 kb on - strand at 3944.669 kb on - strand at 3944.669 kb on - strand at 3944.669 kb on - strand at 3944.676 kb on + strand at 3944.688 kb on + strand at 3944.689 kb on - strand at 3945.250 kb on + strand, within Psyr_3296 at 3945.250 kb on + strand, within Psyr_3296 at 3945.250 kb on + strand, within Psyr_3296 at 3945.258 kb on - strand at 3945.421 kb on - strand, within Psyr_3296 at 3945.618 kb on + strand at 3945.618 kb on + strand at 3945.618 kb on + strand at 3945.618 kb on + strand at 3945.619 kb on - strand at 3945.619 kb on - strand at 3945.619 kb on - strand at 3945.619 kb on - strand at 3945.619 kb on - strand at 3945.651 kb on - strand at 3945.709 kb on + strand at 3945.710 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml remove 3,942,323 - Psyr_3294 0.84 +0.5 3,942,653 + -2.2 3,942,654 - -0.1 3,942,662 + -0.8 3,942,714 + -0.4 3,942,727 + +1.1 3,942,728 - -2.6 3,942,728 - -0.6 3,942,728 - -2.0 3,942,735 + +1.2 3,942,789 + +1.0 3,942,790 - +1.1 3,942,795 + +1.1 3,942,796 - +1.2 3,942,796 - +1.0 3,942,853 + +1.7 3,942,924 + -0.0 3,942,925 - -0.2 3,942,925 - +1.1 3,942,928 - -1.0 3,942,981 + -0.4 3,942,981 + +0.0 3,942,981 + +2.4 3,942,981 + -0.1 3,942,981 + +1.5 3,942,981 + +0.6 3,942,981 + +1.4 3,942,982 - +1.3 3,942,982 - +2.2 3,942,982 - -0.1 3,942,982 - +0.3 3,942,982 - +1.0 3,943,017 + +0.8 3,943,018 - -0.9 3,943,027 - Psyr_3295 0.10 +1.3 3,943,179 + Psyr_3295 0.18 +1.6 3,943,180 - Psyr_3295 0.18 +0.2 3,943,180 - Psyr_3295 0.18 -1.9 3,943,180 - Psyr_3295 0.18 -0.5 3,943,180 - Psyr_3295 0.18 -0.7 3,943,180 - Psyr_3295 0.18 +1.2 3,943,183 - Psyr_3295 0.18 +0.1 3,943,221 + Psyr_3295 0.20 -1.5 3,943,230 + Psyr_3295 0.21 +1.2 3,943,230 + Psyr_3295 0.21 +0.2 3,943,407 + Psyr_3295 0.30 +0.8 3,943,407 + Psyr_3295 0.30 -1.0 3,943,407 + Psyr_3295 0.30 +0.8 3,943,408 - Psyr_3295 0.30 -0.4 3,943,408 - Psyr_3295 0.30 -1.3 3,943,725 + Psyr_3295 0.47 +0.1 3,943,725 + Psyr_3295 0.47 -0.9 3,943,726 - Psyr_3295 0.47 +0.5 3,943,726 - Psyr_3295 0.47 -0.5 3,943,807 - Psyr_3295 0.51 -0.6 3,943,920 + Psyr_3295 0.57 -0.9 3,943,920 + Psyr_3295 0.57 +2.1 3,943,987 - Psyr_3295 0.60 -0.9 3,944,172 + Psyr_3295 0.70 -0.4 3,944,187 + Psyr_3295 0.70 -0.1 3,944,187 + Psyr_3295 0.70 +0.7 3,944,188 - Psyr_3295 0.71 +0.6 3,944,188 - Psyr_3295 0.71 +0.3 3,944,224 - Psyr_3295 0.72 +0.7 3,944,427 + Psyr_3295 0.83 -1.0 3,944,427 + Psyr_3295 0.83 +0.3 3,944,428 - Psyr_3295 0.83 +0.7 3,944,553 + Psyr_3295 0.89 -0.3 3,944,655 + +1.0 3,944,656 - +1.0 3,944,656 - +0.0 3,944,656 - -1.2 3,944,656 - +0.7 3,944,659 + -0.3 3,944,660 - -1.0 3,944,660 - -0.7 3,944,668 + +0.9 3,944,668 + +0.1 3,944,668 + +1.2 3,944,668 + -0.9 3,944,668 + -0.6 3,944,668 + -0.4 3,944,668 + -1.0 3,944,669 - -1.0 3,944,669 - -0.5 3,944,669 - -0.7 3,944,669 - -0.5 3,944,669 - +0.6 3,944,669 - +0.4 3,944,676 + -0.9 3,944,688 + +0.4 3,944,689 - +0.1 3,945,250 + Psyr_3296 0.54 +1.3 3,945,250 + Psyr_3296 0.54 -1.1 3,945,250 + Psyr_3296 0.54 +0.0 3,945,258 - +0.6 3,945,421 - Psyr_3296 0.75 +0.2 3,945,618 + +1.0 3,945,618 + -0.8 3,945,618 + +0.6 3,945,618 + +0.1 3,945,619 - +0.7 3,945,619 - +0.2 3,945,619 - -1.6 3,945,619 - +2.4 3,945,619 - -1.1 3,945,651 - +0.2 3,945,709 + +1.3 3,945,710 - -0.4
Or see this region's nucleotide sequence