Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2993

Experiment: KB with D-Salicin 240 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2992 and Psyr_2993 are separated by 16 nucleotidesPsyr_2993 and Psyr_2994 overlap by 11 nucleotides Psyr_2992: Psyr_2992 - Starch (bacterial glycogen) synthase, at 3,583,668 to 3,585,266 _2992 Psyr_2993: Psyr_2993 - maltooligosyl trehalose hydrolase, at 3,585,283 to 3,587,097 _2993 Psyr_2994: Psyr_2994 - Glycoside hydrolase, family 77, at 3,587,087 to 3,589,165 _2994 Position (kb) 3585 3586 3587 3588Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3584.323 kb on + strand, within Psyr_2992at 3584.323 kb on + strand, within Psyr_2992at 3584.323 kb on + strand, within Psyr_2992at 3584.324 kb on - strand, within Psyr_2992at 3584.410 kb on - strand, within Psyr_2992at 3584.478 kb on + strand, within Psyr_2992at 3584.478 kb on + strand, within Psyr_2992at 3584.478 kb on + strand, within Psyr_2992at 3584.478 kb on + strand, within Psyr_2992at 3584.478 kb on + strand, within Psyr_2992at 3584.667 kb on + strand, within Psyr_2992at 3584.667 kb on + strand, within Psyr_2992at 3584.667 kb on + strand, within Psyr_2992at 3584.667 kb on + strand, within Psyr_2992at 3584.667 kb on + strand, within Psyr_2992at 3584.667 kb on + strand, within Psyr_2992at 3584.668 kb on - strand, within Psyr_2992at 3584.668 kb on - strand, within Psyr_2992at 3584.668 kb on - strand, within Psyr_2992at 3584.668 kb on - strand, within Psyr_2992at 3584.668 kb on - strand, within Psyr_2992at 3584.668 kb on - strand, within Psyr_2992at 3584.668 kb on - strand, within Psyr_2992at 3584.956 kb on - strand, within Psyr_2992at 3584.972 kb on + strand, within Psyr_2992at 3584.973 kb on - strand, within Psyr_2992at 3584.982 kb on + strand, within Psyr_2992at 3584.982 kb on + strand, within Psyr_2992at 3584.982 kb on + strand, within Psyr_2992at 3584.983 kb on - strand, within Psyr_2992at 3584.983 kb on - strand, within Psyr_2992at 3585.039 kb on - strand, within Psyr_2992at 3585.093 kb on + strand, within Psyr_2992at 3585.094 kb on - strand, within Psyr_2992at 3585.220 kb on - strandat 3585.261 kb on + strandat 3585.261 kb on + strandat 3585.262 kb on - strandat 3585.262 kb on - strandat 3585.262 kb on - strandat 3585.264 kb on + strandat 3585.264 kb on + strandat 3585.264 kb on + strandat 3585.264 kb on + strandat 3585.264 kb on + strandat 3585.264 kb on + strandat 3585.265 kb on - strandat 3585.265 kb on - strandat 3585.265 kb on - strandat 3585.277 kb on + strandat 3585.278 kb on - strandat 3585.278 kb on - strandat 3585.294 kb on + strandat 3585.294 kb on + strandat 3585.444 kb on - strandat 3585.444 kb on - strandat 3585.561 kb on - strand, within Psyr_2993at 3585.577 kb on + strand, within Psyr_2993at 3585.578 kb on - strand, within Psyr_2993at 3585.631 kb on + strand, within Psyr_2993at 3585.631 kb on + strand, within Psyr_2993at 3585.631 kb on + strand, within Psyr_2993at 3585.631 kb on + strand, within Psyr_2993at 3585.631 kb on + strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.632 kb on - strand, within Psyr_2993at 3585.763 kb on + strand, within Psyr_2993at 3585.764 kb on - strand, within Psyr_2993at 3585.782 kb on - strand, within Psyr_2993at 3585.799 kb on + strand, within Psyr_2993at 3585.877 kb on + strand, within Psyr_2993at 3585.878 kb on - strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.904 kb on + strand, within Psyr_2993at 3585.905 kb on - strand, within Psyr_2993at 3585.916 kb on + strand, within Psyr_2993at 3585.917 kb on - strand, within Psyr_2993at 3585.917 kb on - strand, within Psyr_2993at 3586.264 kb on + strand, within Psyr_2993at 3586.267 kb on + strand, within Psyr_2993at 3586.268 kb on - strand, within Psyr_2993at 3586.268 kb on - strand, within Psyr_2993at 3586.330 kb on + strand, within Psyr_2993at 3586.331 kb on - strand, within Psyr_2993at 3586.359 kb on + strand, within Psyr_2993at 3586.360 kb on - strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.754 kb on + strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.755 kb on - strand, within Psyr_2993at 3586.805 kb on + strand, within Psyr_2993at 3586.982 kb on + strandat 3586.982 kb on + strandat 3586.983 kb on - strandat 3586.983 kb on - strandat 3587.038 kb on + strandat 3587.038 kb on + strandat 3587.039 kb on - strandat 3587.197 kb on - strandat 3587.365 kb on - strand, within Psyr_2994at 3587.365 kb on - strand, within Psyr_2994at 3587.564 kb on + strand, within Psyr_2994at 3587.705 kb on + strand, within Psyr_2994at 3587.903 kb on + strand, within Psyr_2994

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with D-Salicin 240 ug/ml
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3,584,323 + Psyr_2992 0.41 +0.8
3,584,323 + Psyr_2992 0.41 +1.1
3,584,323 + Psyr_2992 0.41 +2.0
3,584,324 - Psyr_2992 0.41 -2.1
3,584,410 - Psyr_2992 0.46 +0.3
3,584,478 + Psyr_2992 0.51 -1.3
3,584,478 + Psyr_2992 0.51 -0.7
3,584,478 + Psyr_2992 0.51 +0.2
3,584,478 + Psyr_2992 0.51 +0.4
3,584,478 + Psyr_2992 0.51 -1.0
3,584,667 + Psyr_2992 0.62 +1.5
3,584,667 + Psyr_2992 0.62 -1.0
3,584,667 + Psyr_2992 0.62 -0.6
3,584,667 + Psyr_2992 0.62 -1.3
3,584,667 + Psyr_2992 0.62 +0.3
3,584,667 + Psyr_2992 0.62 +0.8
3,584,668 - Psyr_2992 0.63 +0.1
3,584,668 - Psyr_2992 0.63 -1.0
3,584,668 - Psyr_2992 0.63 -0.1
3,584,668 - Psyr_2992 0.63 +0.5
3,584,668 - Psyr_2992 0.63 +0.4
3,584,668 - Psyr_2992 0.63 -1.2
3,584,668 - Psyr_2992 0.63 -0.3
3,584,956 - Psyr_2992 0.81 -2.2
3,584,972 + Psyr_2992 0.82 +2.9
3,584,973 - Psyr_2992 0.82 +0.1
3,584,982 + Psyr_2992 0.82 +1.5
3,584,982 + Psyr_2992 0.82 +0.1
3,584,982 + Psyr_2992 0.82 -0.4
3,584,983 - Psyr_2992 0.82 +2.2
3,584,983 - Psyr_2992 0.82 -1.7
3,585,039 - Psyr_2992 0.86 -0.0
3,585,093 + Psyr_2992 0.89 +0.6
3,585,094 - Psyr_2992 0.89 +0.7
3,585,220 - +1.1
3,585,261 + -0.4
3,585,261 + -1.5
3,585,262 - +0.8
3,585,262 - +0.6
3,585,262 - -1.0
3,585,264 + +2.6
3,585,264 + +1.6
3,585,264 + -0.1
3,585,264 + -0.4
3,585,264 + +0.7
3,585,264 + -0.9
3,585,265 - +0.3
3,585,265 - +0.0
3,585,265 - -0.3
3,585,277 + +1.0
3,585,278 - -0.2
3,585,278 - +2.4
3,585,294 + -0.7
3,585,294 + -0.6
3,585,444 - +1.9
3,585,444 - +0.4
3,585,561 - Psyr_2993 0.15 +0.2
3,585,577 + Psyr_2993 0.16 -0.1
3,585,578 - Psyr_2993 0.16 +2.0
3,585,631 + Psyr_2993 0.19 -0.2
3,585,631 + Psyr_2993 0.19 +2.9
3,585,631 + Psyr_2993 0.19 +2.6
3,585,631 + Psyr_2993 0.19 -0.4
3,585,631 + Psyr_2993 0.19 +2.2
3,585,632 - Psyr_2993 0.19 +0.1
3,585,632 - Psyr_2993 0.19 +0.5
3,585,632 - Psyr_2993 0.19 +0.9
3,585,632 - Psyr_2993 0.19 -0.2
3,585,632 - Psyr_2993 0.19 +1.7
3,585,632 - Psyr_2993 0.19 +0.6
3,585,632 - Psyr_2993 0.19 +0.7
3,585,632 - Psyr_2993 0.19 +0.3
3,585,632 - Psyr_2993 0.19 +0.9
3,585,632 - Psyr_2993 0.19 -2.6
3,585,632 - Psyr_2993 0.19 +0.6
3,585,763 + Psyr_2993 0.26 -0.6
3,585,764 - Psyr_2993 0.27 -0.0
3,585,782 - Psyr_2993 0.27 +0.8
3,585,799 + Psyr_2993 0.28 +0.6
3,585,877 + Psyr_2993 0.33 +0.4
3,585,878 - Psyr_2993 0.33 +0.4
3,585,904 + Psyr_2993 0.34 -1.6
3,585,904 + Psyr_2993 0.34 +1.0
3,585,904 + Psyr_2993 0.34 +0.6
3,585,904 + Psyr_2993 0.34 -0.3
3,585,904 + Psyr_2993 0.34 +0.6
3,585,904 + Psyr_2993 0.34 +0.4
3,585,904 + Psyr_2993 0.34 +0.8
3,585,904 + Psyr_2993 0.34 -0.5
3,585,905 - Psyr_2993 0.34 +1.2
3,585,916 + Psyr_2993 0.35 -0.8
3,585,917 - Psyr_2993 0.35 +1.3
3,585,917 - Psyr_2993 0.35 +0.8
3,586,264 + Psyr_2993 0.54 +0.6
3,586,267 + Psyr_2993 0.54 +0.9
3,586,268 - Psyr_2993 0.54 -0.4
3,586,268 - Psyr_2993 0.54 +0.0
3,586,330 + Psyr_2993 0.58 +0.9
3,586,331 - Psyr_2993 0.58 +0.3
3,586,359 + Psyr_2993 0.59 +0.3
3,586,360 - Psyr_2993 0.59 -1.0
3,586,754 + Psyr_2993 0.81 +1.1
3,586,754 + Psyr_2993 0.81 +1.4
3,586,754 + Psyr_2993 0.81 +0.1
3,586,754 + Psyr_2993 0.81 +0.2
3,586,754 + Psyr_2993 0.81 -0.8
3,586,754 + Psyr_2993 0.81 -0.4
3,586,754 + Psyr_2993 0.81 -0.0
3,586,754 + Psyr_2993 0.81 +0.6
3,586,754 + Psyr_2993 0.81 -0.1
3,586,755 - Psyr_2993 0.81 -0.1
3,586,755 - Psyr_2993 0.81 +1.5
3,586,755 - Psyr_2993 0.81 +0.3
3,586,805 + Psyr_2993 0.84 +0.6
3,586,982 + -0.2
3,586,982 + -0.8
3,586,983 - -0.6
3,586,983 - +0.8
3,587,038 + -0.5
3,587,038 + -0.6
3,587,039 - -0.0
3,587,197 - +0.3
3,587,365 - Psyr_2994 0.13 -0.4
3,587,365 - Psyr_2994 0.13 +0.9
3,587,564 + Psyr_2994 0.23 +0.3
3,587,705 + Psyr_2994 0.30 +0.6
3,587,903 + Psyr_2994 0.39 -0.4

Or see this region's nucleotide sequence